Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003288.1 Length=43081 Score E Sequences producing significant alignments: (Bits) Value seq224806 251 2e-62 seq178946 95.1 3e-15 >seq224806 Length=425 Score = 251 bits (278), Expect = 2e-62 Identities = 309/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 41013 TCGATGAATCAAGATTTATATCAAGATACATTGTACGGTCAACGTGTTGGAAACTATAAA 41072 || ||||| ||||| || ||||||||||| | || || |||||||| || |||||| | Sbjct 423 TCAATGAACCAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCA 364 Query 41073 GATTATGGCATGTACTGGATTAAAAGCGAAGTCAAACCGGATGCAATCATAGAGTTTCAT 41132 ||||| || | || ||| |||||| | || ||||| |||| || |||| || || Sbjct 363 GATTACGGTTTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCAC 304 Query 41133 TTAGATTCTGCTAGCCCACAAGCAAGTGGCGGGCATGTAATCATTAGCGATCGTTTCCCA 41192 |||||| ||||||| ||||||||||||||||| ||||| || | ||||| | | || Sbjct 303 TTAGATGCTGCTAGTCCACAAGCAAGTGGCGGACATGTCATTGTAAGCGACAGATATCCT 244 Query 41193 GCTGATGACATTGACAAGGCATTAAGTAGTGCATTAGATAAAACAGTGGGTAAAATAAGA 41252 || || || || ||||| || || ||| || ||| ||| ||||| || ||||| ||| Sbjct 243 GCAGACGATATAGACAAAGCGGTATCTAGCGCTCTAGGTAAGACAGTTGGCAAAATTAGA 184 Query 41253 GGTGTGACACCTAGAGGGGATTTATTGAACGCTAACGTGTCTGCTGATCTTAATCTTAAT 41312 || |||||||||||| |||||||| || |||||||| ||| | || ||| | ||| Sbjct 183 GGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAAT 124 Query 41313 TATCGTTTAATCGAATTAGGTTTTATCACATCTACGAAAGATTTAAACTACATTAAAAAC 41372 ||| | |||||||| ||||||||||| || || || ||| | |||| || | | Sbjct 123 TATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGACTATATCACTACA 64 Query 41373 AATTTAGACAGCTTCACGAAGCGGATTGCTGAAGCCATTAACGGCAGACAAATTGATGCG 41432 | |||| || || || ||||| ||||| || || || || || || ||||| ||||| Sbjct 63 CACCTAGATAGTTTTACTAAGCGTATTGCAGAGGCTATCAATGGTAGGCAAATCAATGCG 4 Query 41433 CC 41434 || Sbjct 3 CC 2 >seq178946 Length=318 Score = 95.1 bits (104), Expect = 3e-15 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 8074 AACGCTGAACCATCAAATTTATTCGAGACAAAGATAAGACACTCAAGCAACATCAAAATT 8133 |||||||| || || ||| |||||| || ||||| ||||| ||| |||| |||| Sbjct 318 AACGCTGAGCCTTCTAATACATTCGAAACCAAGATTAGACATTCACCTTCAATCACAATT 259 Query 8134 AACAACAAACGTTTCATTAATCCAAGTATTAACGATGTTGTACAAGCAATTAGAAATGGT 8193 ||| | || || | || |||||||| | | || ||| ||||||||||||| || Sbjct 258 AACGATAAGAAATTTGTGAACCCAAGTATCAGTCAAGTAGTAGAAGCAATTAGAAACGGA 199 Query 8194 AATTAAAAATTAATTAAAAGGACGGTATTTAATTATGAA 8232 || ||| || || ||||||||||||| | ||||||||| Sbjct 198 AACTAATAA-AAAATAAAAGGACGGTAATCAATTATGAA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137238548438992