Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 196 6e-45
seq230622 84.2 3e-11
>seq273947
Length=700
Score = 196 bits (216), Expect = 6e-45
Identities = 413/606 (68%), Gaps = 14/606 (2%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
||||| ||||| || || | |||||| || ||||| || || |||| |||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
||||| ||||||| ||||| |||||| || ||||| | | || || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
|||||||| || || ||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530
||| || | || || | ||||| || || ||| || | || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 33531 AATCTAACG-GTTTCTTCACTCGGTGGATGTAATAAATGTTTAA-ACATCAAACATGCGA 33588
| || | |||| ||||| || | | | || | || ||| |||||| || |
Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCT-TCCTCAACAATGAATACAACAAACAAGCAA 303
Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648
||||||| || ||||||||||||| ||| || || || || || |||||||| ||||
Sbjct 302 AATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCA 243
Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708
||| ||||| ||||| | ||| || ||||| ||| || || |||||||||||||
Sbjct 242 TTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTT 183
Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCAC 33764
| || |||||| || | || | ||| || ||| | | |||||| ||||||
Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCAC 127
Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824
||| |||||||| |||||||| || ||||| || | ||| || || ||| ||| | |
Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68
Query 33825 TAG-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883
| | | || || || |||||| | |||||| |||| | |||||| ||||| || ||
Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8
Query 33884 ATGAAT 33889
|| ||
Sbjct 7 GTGGAT 2
>seq230622
Length=445
Score = 84.2 bits (92), Expect = 3e-11
Identities = 193/291 (66%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 33866 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33925
|||||| ||||| || || || || ||||||||||| || |||||||| || || |||
Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60
Query 33926 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33985
|| || | | || |||||| | || ||| | || | ||| || || || ||
Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120
Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045
|||| || ||||| || || | || || | || || | || ||||| || ||||
Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180
Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105
| ||||| | ||| | || | ||| ||||| || | ||||| || || ||
Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240
Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156
|| ||||| || ||||| | ||| || | | | || || ||||| || ||
Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627415538655360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |