Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq273947 196 6e-45 seq230622 84.2 3e-11 >seq273947 Length=700 Score = 196 bits (216), Expect = 6e-45 Identities = 413/606 (68%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| ||||| || || | |||||| || ||||| || || |||| |||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| ||||| |||||| || ||||| | | || || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||||||| || || ||||| || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||| || | || || | ||||| || || ||| || | || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 33531 AATCTAACG-GTTTCTTCACTCGGTGGATGTAATAAATGTTTAA-ACATCAAACATGCGA 33588 | || | |||| ||||| || | | | || | || ||| |||||| || | Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCT-TCCTCAACAATGAATACAACAAACAAGCAA 303 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 ||||||| || ||||||||||||| ||| || || || || || |||||||| |||| Sbjct 302 AATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCA 243 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 ||| ||||| ||||| | ||| || ||||| ||| || || ||||||||||||| Sbjct 242 TTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTT 183 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCAC 33764 | || |||||| || | || | ||| || ||| | | |||||| |||||| Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCAC 127 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||| |||||||| |||||||| || ||||| || | ||| || || ||| ||| | | Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68 Query 33825 TAG-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33883 | | | || || || |||||| | |||||| |||| | |||||| ||||| || || Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8 Query 33884 ATGAAT 33889 || || Sbjct 7 GTGGAT 2 >seq230622 Length=445 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/291 (66%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 33866 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 33925 |||||| ||||| || || || || ||||||||||| || |||||||| || || ||| Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60 Query 33926 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33985 || || | | || |||||| | || ||| | || | ||| || || || || Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 |||| || ||||| || || | || || | || || | || ||||| || |||| Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 | ||||| | ||| | || | ||| ||||| || | ||||| || || || Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || ||||| || ||||| | ||| || | | | || || ||||| || || Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627415538655360