Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq218924 98.7 9e-16 seq220814 96.9 3e-15 >seq218924 Length=406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| |||||||||||||| | ||||| ||||| || | ||||| || || ||| Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAA 11744 ||||| ||||| | || |||||||||| || |||||| ||||| || | ||| || | Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACCTGAGA 212 Query 11745 AGAATATTCCCTCCACA 11761 |||| |||||||| ||| Sbjct 213 AGAAAATTCCCTCAACA 229 >seq220814 Length=412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||||||||| ||||| | || || ||||||||||| || | | ||| || | Sbjct 222 CTTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAA 163 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| ||||| | || ||| ||| ||| ||| | ||||| || | Sbjct 162 CTCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAAC 103 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || ||||||| || |||||||| || || ||| ||| | |||||| || | ||| Sbjct 102 CAACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATAT 11558 | |||| || | ||| | || ||| ||| | ||||||| Sbjct 42 AGCCACTGGCAACGCATCACACACAAATTCCCTCTCTATAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466737893265280