Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq218924 98.7 9e-16
seq220814 96.9 3e-15
>seq218924
Length=406
Score = 98.7 bits (108), Expect = 9e-16
Identities = 105/137 (77%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686
||||| |||||||||||||| | ||||| ||||| || | ||||| || || |||
Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154
Query 11687 AATCCGGGCATCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAA 11744
||||| ||||| | || |||||||||| || |||||| ||||| || | ||| || |
Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACCTGAGA 212
Query 11745 AGAATATTCCCTCCACA 11761
|||| |||||||| |||
Sbjct 213 AGAAAATTCCCTCAACA 229
>seq220814
Length=412
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
|||||||||||||| ||||| | || || ||||||||||| || | | ||| || |
Sbjct 222 CTTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAA 163
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
|||||| | ||| ||||| | || ||| ||| ||| ||| | ||||| || |
Sbjct 162 CTCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAAC 103
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
|| ||||||| || |||||||| || || ||| ||| | |||||| || | |||
Sbjct 102 CAACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43
Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATAT 11558
| |||| || | ||| | || ||| ||| | |||||||
Sbjct 42 AGCCACTGGCAACGCATCACACACAAATTCCCTCTCTATAT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 466737893265280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |