Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 192 8e-44
seq218924 96.9 5e-15
seq220814 93.3 6e-14
seq230622 87.8 2e-12
>seq273947
Length=700
Score = 192 bits (212), Expect = 8e-44
Identities = 411/604 (68%), Gaps = 10/604 (2%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
||||| ||||| || || | |||||| || ||||| || || |||| ||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
||||| |||| |||||||| ||||||||| ||||| | | || || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046
|||||||| || |||||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106
||| || | || || | ||||| || ||| || || || || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 36107 GATATTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165
| ||| | |||| ||||| || | | || | | ||| |||||| || ||
Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302
Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225
|||||| || ||||||||||||| ||| || || || || || |||||||| |||||
Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242
Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTT 36284
|| ||||| ||||| | ||| || ||||| ||| | | | || || ||||| |||||||
Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183
Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT--ATCCACTT 36342
| || ||||| || | || | ||| | || || | || ||| ||||||||
Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGC--AAACGATTCCGTGCTGTCGATCCACTT 125
Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402
| |||||||| |||||||| || ||||| || | ||||| || ||| ||| | ||
Sbjct 124 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-ATC 66
Query 36403 G-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461
| | || || || |||||| | ||| || || | | |||||| ||||| || || |
Sbjct 65 GACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGT 6
Query 36462 GAAT 36465
| ||
Sbjct 5 GGAT 2
>seq218924
Length=406
Score = 96.9 bits (106), Expect = 5e-15
Identities = 217/321 (68%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209
||| |||||| || ||||| || || || || || ||||| ||| || || || || |
Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149
Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268
|||| | ||| |||||||| ||||| ||||| | ||| || || || ||| | | ||
Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGA-GCAGAAACTACCT 208
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 36324
|| ||||||||||| || || || || || | || | ||| | ||| | |
Sbjct 209 GAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGC-GAACGATTCTGT 267
Query 36325 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384
||||||| |||||||| |||||||| ||||| || || || || || | || ||
Sbjct 268 ACTGTCA---ATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTC 324
Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444
|||||| || | || || ||| | ||| || | ||| || |||| | |||
Sbjct 325 AATAGCACGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAAG 384
Query 36445 ACTATACATTTCCGAATGAAT 36465
||| ||||| || || || ||
Sbjct 385 ACTGTACATCTCAGAGTGGAT 405
>seq220814
Length=412
Score = 93.3 bits (102), Expect = 6e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
||||| |||||||| || | ||| || || |||||||| || || | ||||| ||
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986
||||| |||| |||||||| ||| || || ||||| | | | || || | || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
|| ||||||| ||||||||||| ||| |||||| || | ||||||||| | |||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43
>seq230622
Length=445
Score = 87.8 bits (96), Expect = 2e-12
Identities = 194/291 (67%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501
|||||| ||||| || || || || ||||||||||| ||||||||||| || || |||
Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60
Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561
|| || | | || |||||| | || ||| | || | ||| || || || ||
Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120
Query 36562 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG 36621
||| || ||||| || || | || || | || || | || |||| || ||||
Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180
Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681
| ||||| | ||| | || | ||| ||||| || | ||||| || || ||
Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240
Query 36682 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732
|| ||||| || ||||| | ||| || | | | || ||||||||||| ||
Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655662594758080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |