Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 100 3e-16
seq126021 98.7 1e-15
seq44495 86.0 6e-12
seq279770 84.2 2e-11
>seq281289
Length=787
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||||||| | || ||||||| || || |||||||| ||||||||||||
Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493
Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| | | |||| || |||||||| || |||||| | || || | |||||| || ||||
Sbjct 492 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
| || || ||||| || ||| |||| | || | | || | || || | |||
Sbjct 434 GGATTCCCTCTTTATC-CTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCC 376
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||| ||| | || |||||||| | ||||| || || ||||||||
Sbjct 375 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326
>seq126021
Length=250
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||||| || ||||| ||||||||||| ||||||
Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| | ||||||||||| || || ||| |||||| | ||||||||| || ||
Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | ||| | | || | |||||| | | || ||
Sbjct 123 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAAC 65
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||| || || | |||||| ||||| ||||||||
Sbjct 64 TTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17
>seq44495
Length=1402
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || || |||||||| || || || || |||||
Sbjct 938 ACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCC 997
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || ||||| ||||||| | ||||| || || || || || || ||||| |
Sbjct 998 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 1057
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | || | ||||| | ||| ||||| | ||| | ||||||
Sbjct 1058 ATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTTG 1117
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||| || ||||| || ||||||
Sbjct 1118 CCGGTCAACGTCTTGACGAAAATCTGCATA 1147
>seq279770
Length=767
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||| || || || || || |||||| | || | ||| || || || ||||||
Sbjct 378 GTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCA 319
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686
||| |||| || | || || ||||| || ||||| ||||| || ||| | |||| ||
Sbjct 318 GCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATCTTTGCCTT 260
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
|| | || | |||||| | | |||||||| | ||| | || ||||| || | ||
Sbjct 259 TACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGGGT 200
Query 139747 TTTTACGAATATTTGCAT 139764
||||||||| ||||||||
Sbjct 199 TTTTACGAAGATTTGCAT 182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494172061510400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |