Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq281289 100 3e-16 seq126021 98.7 1e-15 seq44495 86.0 6e-12 seq279770 84.2 2e-11 >seq281289 Length=787 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | || ||||||| || || |||||||| |||||||||||| Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | |||| || |||||||| || |||||| | || || | |||||| || |||| Sbjct 492 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || || ||||| || ||| |||| | || | | || | || || | ||| Sbjct 434 GGATTCCCTCTTTATC-CTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCC 376 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | || |||||||| | ||||| || || |||||||| Sbjct 375 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq126021 Length=250 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| ||||||||||| |||||| Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||||||||| || || ||| |||||| | ||||||||| || || Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | |||||| | | || || Sbjct 123 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAAC 65 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | |||||| ||||| |||||||| Sbjct 64 TTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq44495 Length=1402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || |||||||| || || || || ||||| Sbjct 938 ACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCC 997 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| ||||||| | ||||| || || || || || || ||||| | Sbjct 998 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 1057 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||| ||||| | ||| | |||||| Sbjct 1058 ATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCTTG 1117 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| || ||||| || |||||| Sbjct 1118 CCGGTCAACGTCTTGACGAAAATCTGCATA 1147 >seq279770 Length=767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || || || || || |||||| | || | ||| || || || |||||| Sbjct 378 GTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCA 319 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| |||| || | || || ||||| || ||||| ||||| || ||| | |||| || Sbjct 318 GCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCT-TGAATCTTTGCCTT 260 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | |||||| | | |||||||| | ||| | || ||||| || | || Sbjct 259 TACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTGCCAGTGAGGGT 200 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||| |||||||| Sbjct 199 TTTTACGAAGATTTGCAT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494172061510400