Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq273947 197 2e-45 seq220814 93.3 6e-14 seq230622 87.8 3e-12 seq58762 84.2 3e-11 >seq273947 Length=700 Score = 197 bits (218), Expect = 2e-45 Identities = 413/604 (68%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| ||||| || || | |||||| || ||||| || || |||| |||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| ||||| ||||||||| ||||| | | || || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||||||| || |||||||| || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 ||| || | || || | ||||| || || ||| || || || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 49909 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | || | |||| ||||| || | | || | | ||| |||||| || || Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 |||||| || ||||||||||||| ||| | || || || || |||||||| ||||| Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTT 50086 || ||||| ||||| | ||| || ||||| ||| | | || || ||||||||||||| Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--ATCCACTT 50144 | || ||||| || | || | ||| || ||| | | || ||| |||||||| Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AAC-GATTCCGTGCTGTCGATCCACTT 125 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 | |||||||| |||||||| || ||||| || | ||| || || ||| ||| | || Sbjct 124 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-ATC 66 Query 50205 G-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | || || || |||||| | |||||| |||| | |||||| ||||| || || | Sbjct 65 GACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGT 6 Query 50264 GAAT 50267 | || Sbjct 5 GGAT 2 >seq220814 Length=412 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| |||||||| || | ||| || || |||||||| || || | |||||| || Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| ||||| ||| || || ||||| | | | || || | || | Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||||| | ||||||||||| ||| |||||| || | ||||||||| | ||| Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43 >seq230622 Length=445 Score = 87.8 bits (96), Expect = 3e-12 Identities = 194/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 |||||| ||||| || || || || ||||||||||| || |||||||| || || ||| Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 || || | | || |||||| | || ||| |||| | ||| || || || || Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423 ||| || ||||| || || | || || | || || || || |||| ||| |||| Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 | ||||| | ||| | || | ||| ||||| || | ||||| || || || Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || ||||| || ||||| | ||| || | | | || || ||||| || || Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291 >seq58762 Length=2755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||| | ||| |||||||| || || ||||| || |||| | | Sbjct 1438 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTGAACCAACGTTGTGACATTGTGTGA 1379 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | |||||| || || | ||| | ||| ||||| || || ||||| | |||||| Sbjct 1378 TAAGTTTTAATAGCAGAATCAACATCATCCTTG-TGAATACCAACAGCGACCCTCATTAA 1320 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || || || || || | ||| | || ||||| | ||| || |||||| Sbjct 1319 CATGTGTTGCGGCCTCTCCACAACCTTCCCCTGAATCTTCAAGAGGTATGACCTTTCCAG 1260 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| | | || |||||| || || || || || Sbjct 1259 AGTTTTGAACCCAAAGAAATCATAATCAAAGTCACGGTCATATATGAT 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715529394623680