Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 197 2e-45
seq220814 93.3 6e-14
seq230622 87.8 3e-12
seq58762 84.2 3e-11
>seq273947
Length=700
Score = 197 bits (218), Expect = 2e-45
Identities = 413/604 (68%), Gaps = 10/604 (2%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
||||| ||||| || || | |||||| || ||||| || || |||| |||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||| ||||| ||||||||| ||||| | | || || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
|||||||| || |||||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908
||| || | || || | ||||| || || ||| || || || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 49909 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967
| || | |||| ||||| || | | || | | ||| |||||| || ||
Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302
Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027
|||||| || ||||||||||||| ||| | || || || || |||||||| |||||
Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242
Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGATTCCTT 50086
|| ||||| ||||| | ||| || ||||| ||| | | || || |||||||||||||
Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183
Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--ATCCACTT 50144
| || ||||| || | || | ||| || ||| | | || ||| ||||||||
Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AAC-GATTCCGTGCTGTCGATCCACTT 125
Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204
| |||||||| |||||||| || ||||| || | ||| || || ||| ||| | ||
Sbjct 124 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-ATC 66
Query 50205 G-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263
| | || || || |||||| | |||||| |||| | |||||| ||||| || || |
Sbjct 65 GACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAGT 6
Query 50264 GAAT 50267
| ||
Sbjct 5 GGAT 2
>seq220814
Length=412
Score = 93.3 bits (102), Expect = 6e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
||||| |||||||| || | ||| || || |||||||| || || | |||||| ||
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||| ||||| ||| || || ||||| | | | || || | || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
|| ||||| | ||||||||||| ||| |||||| || | ||||||||| | |||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43
>seq230622
Length=445
Score = 87.8 bits (96), Expect = 3e-12
Identities = 194/291 (67%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303
|||||| ||||| || || || || ||||||||||| || |||||||| || || |||
Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60
Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363
|| || | | || |||||| | || ||| |||| | ||| || || || ||
Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120
Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG 50423
||| || ||||| || || | || || | || || || || |||| ||| ||||
Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180
Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483
| ||||| | ||| | || | ||| ||||| || | ||||| || || ||
Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240
Query 50484 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534
|| ||||| || ||||| | ||| || | | | || || ||||| || ||
Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291
>seq58762
Length=2755
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| | ||||| | ||| |||||||| || || ||||| || |||| | |
Sbjct 1438 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTGAACCAACGTTGTGACATTGTGTGA 1379
Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453
|| || | |||||| || || | ||| | ||| ||||| || || ||||| | ||||||
Sbjct 1378 TAAGTTTTAATAGCAGAATCAACATCATCCTTG-TGAATACCAACAGCGACCCTCATTAA 1320
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513
|||||| || || || || || | ||| | || ||||| | ||| || ||||||
Sbjct 1319 CATGTGTTGCGGCCTCTCCACAACCTTCCCCTGAATCTTCAAGAGGTATGACCTTTCCAG 1260
Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
|||||| || ||||| | | || |||||| || || || || ||
Sbjct 1259 AGTTTTGAACCCAAAGAAATCATAATCAAAGTCACGGTCATATATGAT 1212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715529394623680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |