Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq273947 138 1e-27 seq218924 123 2e-23 seq220814 82.4 7e-11 >seq273947 Length=700 Score = 138 bits (152), Expect = 1e-27 Identities = 406/612 (66%), Gaps = 23/612 (4%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | |||||||||||||||||| || || || |||| || ||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 13641 TCCATAAAATCAAATGGATTTATTGACA-TAAACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| |||||||||||||| | ||| || | | ||| || | |||| || | Sbjct 540 TCCATCCAATCAAATGGATTT-TGAACATTATAGATTTTGCCATACCCTAAAGCTCCAAC 482 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||||| || | ||| ||||| ||||| ||| ||||| | |||||| || | ||| Sbjct 481 CAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAG 422 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA- 13818 ||||| | || | ||||| | |||||| || || || | | || Sbjct 421 AGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAAT 362 Query 13819 -TAATTGTAAT--AATCTCATTAGAAGGAGGATATT--TTA--GATGTTTAAAAATTAAA 13871 | ||| | | | ||||| | || | || | | ||| || || ||| Sbjct 361 CTCATT-CACTCGATTCTCACT-----CAGTTTCTTCCTCAACAATGAATACAA--CAAA 310 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || |||||||| |||||||| ||||| |||| ||| | || ||||| ||||| | | Sbjct 309 CAAGCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGT 250 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| ||||| |||||||| ||||| || | || |||| || || || ||||| Sbjct 249 CCAGGCATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAA 191 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 ||||| ||||| |||||| || | | || || |||||||| | | || ||| Sbjct 190 GATTCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGATTCCGTGCTG-TCG- 133 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| ||| ||||| |||| || || || | | | | || || || ||| Sbjct 132 -ATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACG 74 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 |||||| |||||| || | | | || || || || | ||| | || ||||| Sbjct 73 AAATAATCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACAT 14 Query 14171 TTCAGAGTGTAT 14182 |||||||| || Sbjct 13 CTCAGAGTGGAT 2 >seq218924 Length=406 Score = 123 bits (136), Expect = 2e-23 Identities = 221/318 (69%), Gaps = 11/318 (3%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||||||||||||||| || |||||||| ||| | || ||||| || ||| Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCAAATGACCCGGAAA 13986 ||||| ||||| | || ||||||||||||| |||||| |||| || | || || | Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAGAAACT--ACCTGAGA 212 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 |||| ||||||||||| ||| ||||| | | || || | |||||| || | ||| Sbjct 213 AGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGATTCTGTACTGT 272 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 ||||| || ||||| |||| ||||| || | | | |||||||||| Sbjct 273 ---CAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAG 329 Query 14107 CATTAAATAAATATTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCT 14164 || ||||| | |||||| | | | |||| || || || |||| || | || Sbjct 330 CACGGAATAACCGATTCTTCTCAATCGAATCCTTG--ATATAGGTTTCAAGGAGAAGACT 387 Query 14165 ATACATTTCAGAGTGTAT 14182 ||||| |||||||| || Sbjct 388 GTACATCTCAGAGTGGAT 405 >seq220814 Length=412 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||||| ||||||||| |||||||| ||||| || || | || ||| || Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 13641 TCCATAAAATCAAATGGATTTATTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| |||||||||||||| | || | | | ||| ||| | |||| || | Sbjct 161 TCCATCCAATCAAATGGATTT-TGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAAC 103 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACC 13753 || ||||| | | ||| || || ||||| ||| ||||| | |||||| || Sbjct 102 CAACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477898365380800