Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq273947 145 7e-30 seq218924 120 3e-22 >seq273947 Length=700 Score = 145 bits (160), Expect = 7e-30 Identities = 404/609 (66%), Gaps = 17/609 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | ||||||||||||||| || || || || |||| || ||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 13429 TCCATAAAATCGAATGGATTTGTTGACA-TAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| |||| ||||||||| | ||| || | | ||| || | |||| || | Sbjct 540 TCCATCCAATCAAATGGATTT-TGAACATTATAGATTTTGCCATACCCTAAAGCTCCAAC 482 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||||| || | ||| ||||| ||||| ||| ||||| | |||||| || | ||| Sbjct 481 CAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAG 422 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||| | || | | ||||| | |||||| || || ||| ||| Sbjct 421 AGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCG---GTAAC 365 Query 13608 AATCTTAATAATGTCATT-AGAAGGAGGATATT--TTA--GATGTTTAAAAATTAAACAC 13662 ||||| | | | ||| | || | || | | ||| || || ||||| Sbjct 364 AATCTCATTCACTCGATTCTCACTCAGTTTCTTCCTCAACAATGAATACAA--CAAACAA 307 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 |||||||| |||||||| ||||| |||| ||| | || ||||| ||||| | ||| Sbjct 306 GCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCA 247 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATAT 13781 ||||| ||||| |||||||| ||||| || | || ||| ||| || || ||||| || Sbjct 246 GGCATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGAT 188 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATAT 13841 ||| ||||| |||||| || | | || || |||||||| | | ||| || Sbjct 187 TCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGATTCCGTGCTGT---CGAT 131 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 ||| ||| ||||| |||| || || || | | | | || ||||||||| || Sbjct 130 CCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAA 71 Query 13902 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 ||| | |||||| || | | | || || || || | ||| | || ||||| || Sbjct 70 TAATCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTC 11 Query 13962 AGAGTGTAT 13970 |||||| || Sbjct 10 AGAGTGGAT 2 >seq218924 Length=406 Score = 120 bits (132), Expect = 3e-22 Identities = 220/317 (69%), Gaps = 9/317 (3%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||||||||||||||| || |||||||| ||| | || ||||| || ||| Sbjct 95 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTT 154 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAA 13775 ||||| ||||| | || |||||||||||||| || || | ||| ||| || || || Sbjct 155 AATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCAGAAACTACCTGAGAA 213 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| ||||||||||| ||| ||||| | | || || | |||||| || | ||| Sbjct 214 GAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGATTCTGTACTGT- 272 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| || ||||| |||| ||||| || | | | ||||| || || Sbjct 273 --CAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGC 330 Query 13896 ATTGAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 | |||||| | | |||||| | | | |||| || || || |||| || | || Sbjct 331 ACGGAATAACCGATTCTTCTCAATCGAATCCTTG--ATATAGGTTTCAAGGAGAAGACTG 388 Query 13954 TACATTTCAGAGTGTAT 13970 ||||| |||||||| || Sbjct 389 TACATCTCAGAGTGGAT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476763510175680