Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq21568 102 8e-17 seq279770 93.3 4e-14 seq281289 87.8 2e-12 seq126021 87.8 2e-12 seq44495 86.0 6e-12 >seq21568 Length=652 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||| | || ||||| ||||| ||||||||||| ||| | || || ||||| Sbjct 329 ACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AGAGTTCTGCCATCTTC 387 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || ||| ||||||| | ||||| || || || || || |||||||| Sbjct 388 CAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 447 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| || | | || | ||||| | ||||||||| | ||| | ||||| Sbjct 448 AATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCTT 507 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || ||||| || ||||| Sbjct 508 GCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq279770 Length=767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | ||||||||| || || || ||||||||| | || | ||| || Sbjct 390 ACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 331 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 ||||| ||||||||| |||| || | || || ||||| || ||||| ||||| || | Sbjct 330 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 271 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| |||| | || | ||||| | | ||| || || | || | || ||| Sbjct 270 ATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTG 211 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||||||||| |||||||| Sbjct 210 CCAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq281289 Length=787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||| | || || |||| || ||||||||||||||||| |||||| Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | |||| || ||||| || || |||||| | || || | |||||| || |||| Sbjct 492 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || ||||| || |||||| || | | || | || || | ||| | Sbjct 434 GGATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCA 375 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| || | || |||||||| | ||||| || || |||||||| Sbjct 374 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq126021 Length=250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| |||||||||||| | ||| | |||||||| || Sbjct 219 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGC 160 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| |||||| | ||||||||| || || || ||||| ||||| ||| || Sbjct 159 TTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTA 100 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | ||| ||||| | || | ||||| || || Sbjct 99 GCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTG 40 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| |||||||| Sbjct 39 AGCGTTTTGACGAAAATTTGCAT 17 >seq44495 Length=1402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || | |||| || || || || || ||||||||||| Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || || || ||||| ||||||| | |||||||| ||||| Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| ||| | | || | |||||| | | || || Sbjct 812 ATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCACC 871 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| || || ||||| || ||||| Sbjct 872 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505080697779840