Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq279770 89.7 4e-13 seq281664 86.0 5e-12 seq122851 82.4 6e-11 >seq279770 Length=767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| ||||| ||||| ||||||||||| || || | ||| ||||||| Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| |||| |||||||| ||||| || | ||||| ||||| Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | | ||||| | ||| || | ||||||||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 >seq281664 Length=792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || || | ||| | ||||||||| |||||| || Sbjct 580 GTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCA 639 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||||||| || || ||| | || || ||||| ||| || || Sbjct 640 GCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTC 699 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || || || ||| || | ||| ||||| || || || | |||| Sbjct 700 ACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTT 759 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||||||||| Sbjct 760 TTGACAAAAATTTGCAT 776 >seq122851 Length=247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| |||||||| || |||||||||||||||||||| | Sbjct 120 TTCCACCGCGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATATTGTAATCTG 61 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 ||| || | |||| || || || ||||| ||| |||| | ||||| || || Sbjct 60 CCAGAGTCCTACCGTCTTCAAGTTGCTTACCAGCAAAAATCAACCTCTGTTGGTC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413031189278128