Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq273947 147 2e-30 seq218924 98.7 9e-16 seq220814 96.9 3e-15 >seq273947 Length=700 Score = 147 bits (162), Expect = 2e-30 Identities = 306/446 (69%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| ||||| ||||||||||| | ||||||||||||||| || || || || Sbjct 619 ATTAGACATCACAGATGCCTTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTT 560 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTT 12958 |||| || ||||| |||||| |||| || ||||||| ||||| |||| ||| Sbjct 559 CCCTTGCAATGAAATCAATTCCATCCAATCAAATGGATTTT--GAACATTATAGATTTTG 502 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | ||||||| || | |||||| || || ||||| || ||||| || |||| ||| Sbjct 501 CCATACCCTAAAGCTCCAACCAATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAA 442 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || | |||||||| | || ||||||| || || | || | | |||||| Sbjct 441 TCGCCATTCATTCCAACTAGAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATA 382 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT-TTGATAGATG 13137 || || |||||| |||| || || | | | || | ||| | || | || | | Sbjct 381 TCTACGGCTTCGGTAACAATCTCATTCACT-CGAT-TCTCACTCAGTTTCTTCCTCAACA 324 Query 13138 CTTAA-ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | || ||| || ||| |||||||| || || | || || |||| || | ||| | Sbjct 323 ATGAATACAACAAACAAGCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCAT 264 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AAC 13255 |||| ||||| || || ||||| | || |||||||| | ||| || || | |||| || Sbjct 263 TTGAGAATGTGAGTCCAGGCATTAATCCACGTTTTTTCAACCAGAAAAT-GGAGCAGAAG 205 Query 13256 GAACCCGaaaaaaaTATTCCTTCAAC 13281 ||| || || || ||||||||||| Sbjct 204 CTACCTGAGAAGAAGATTCCTTCAAC 179 >seq218924 Length=406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || ||| ||||||||||| || | ||||||||||| || | ||| ||||| | Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCC--AAAATATAGCAGCAAACGAACC 13260 | |||| || ||||| ||||| |||||||| | || |||||| ||||| |||| ||| Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG-AAAC-TACC 207 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATT 13320 || || || ||||| ||||| || ||||| | | || ||| || || ||| Sbjct 208 TGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCA----GCGAACGATT 263 Query 13321 -TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAG 13369 | |||| || |||||||| ||||| | || |||| || |||||| Sbjct 264 CTGTACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAG 313 >seq220814 Length=412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| ||||| ||||||||||| | ||||||||| ||||| || || || || Sbjct 240 ATTTGACATCACAGATGCCTTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTT 181 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAAC--AATAGTATTTT 12958 || | || ||||| ||||| |||| || ||||||| |||| ||| ||| Sbjct 180 CCCCTGCAATGAAATCAACTCCATCCAATCAAATGGATTTT--GAACGTTGTAGATTTTC 123 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | | ||||||| || | ||| || || | ||||| |||||||| || |||| ||| Sbjct 122 TCATACCCTAAGGCTCCAACCAACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAA 63 Query 13019 TCACAGTTCATTCC 13032 || | |||||||| Sbjct 62 TCCCCATTCATTCC 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429379769319024