Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq279770 163 7e-35
seq281289 161 2e-34
seq48980 136 9e-27
seq281664 127 5e-24
seq126021 122 2e-22
seq280556 111 4e-19
seq21568 109 1e-18
seq122851 95.1 3e-14
seq299969 91.5 3e-13
seq124980 89.7 1e-12
>seq279770
Length=767
Score = 163 bits (180), Expect = 7e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| ||||| | || | ||| || | ||| | |||||||| ||||||||||| |||||
Sbjct 639 ATACCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCG 580
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| ||||||| |||||| || || || || ||||||||||| || ||||||||||||||
Sbjct 579 GCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGT 520
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || || || || || || || ||||| || | ||||| | |||
Sbjct 519 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 460
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || ||||| || || |||||||| || || |||||||| |||||
Sbjct 459 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410
Score = 156 bits (172), Expect = 1e-32
Identities = 168/221 (76%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| ||||| || | ||| | ||||||||| ||||| ||||| || || | || ||||
Sbjct 399 AGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGG 340
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
||||| || ||||| || |||||||| || ||||||||||| || || || || || |||
Sbjct 339 CCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCT 280
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGT 104518
||||| ||||||||||| |||||||| || | || || ||| ||| ||||| ||
Sbjct 279 TTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGG 223
Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| || |||||||| || || |||||
Sbjct 222 GTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182
>seq281289
Length=787
Score = 161 bits (178), Expect = 2e-34
Identities = 177/234 (76%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || | ||| ||||| ||||| ||||||||||| |||||
Sbjct 783 ATTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCC 724
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| | ||| | || ||||| |||||||| ||||| |||||||| ||||| || |||||
Sbjct 723 GCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGG 664
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506
|| ||||| |||||||| || ||||| || || ||||| || | |||||| ||| |
Sbjct 663 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---T 607
Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||||| || || || |||||||| || ||||| || || || ||||||
Sbjct 606 TCCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||| || || ||||| || | || |||| ||| || || || || ||||||
Sbjct 522 GTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCGAGCTGCTTTCCA 463
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| ||||| || || || ||||| ||||| |||||||||||||| || || ||
Sbjct 462 GCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTGAATTTTGGCCTTC 403
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| | ||| ||||| || || || || || || || || |||
Sbjct 402 ACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTT 343
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| || |||||
Sbjct 342 TTCACAAAGATTTGCAT 326
>seq48980
Length=3483
Score = 136 bits (150), Expect = 9e-27
Identities = 164/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| | || ||||| | || || || ||||| || || ||||| | || |||| |
Sbjct 1041 AGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 982
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| || || | || || || || ||||| || | ||| || || || |||||||| ||
Sbjct 981 CCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 922
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||||||||||||||| || ||||| || | |||||| | || ||||| || ||
Sbjct 921 TTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 862
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564
|| ||||| || ||||| ||||| || || |||||||| ||||
Sbjct 861 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTGT 819
>seq281664
Length=792
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || || |||| || || || || ||||| || || ||||||
Sbjct 124 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCA 183
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || ||| || || ||||| |||||||| || ||||| || ||||| ||
Sbjct 184 GCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTA 243
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| | || ||||| | || || ||||| || || || ||
Sbjct 244 ACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTC 303
Query 104543 TTTACAAATATCTGCATT 104560
|| ||||| |||||||||
Sbjct 304 TTGACAAAGATCTGCATT 321
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||||| || ||||| || || ||||| | ||||||| ||||| ||
Sbjct 568 ACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCC 627
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
| ||||||||||| || || || |||||||| || || || || ||||| || ||||||
Sbjct 628 AACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGA 687
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || || || || | || || || || ||||| | || || |||||
Sbjct 688 ATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTT 747
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||| ||||| || |||||
Sbjct 748 CCGGTGAGAGTTTTGACAAAAATTTGCAT 776
>seq126021
Length=250
Score = 122 bits (134), Expect = 2e-22
Identities = 168/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || || || | || || || || ||||| || || ||
Sbjct 246 ATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 187
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| ||| || | ||| ||||| || || || || ||||| || | ||| || ||||| ||
Sbjct 186 GCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGG 127
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506
|| || ||||| || || |||||||| ||||| ||||| || | || || ||| |
Sbjct 126 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCT---T 70
Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || ||||||||||||||||| || || || ||||| || || || ||||||
Sbjct 69 TCAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCATT 16
>seq280556
Length=777
Score = 111 bits (122), Expect = 4e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| ||||| || ||||| ||||| || | || ||| || || ||||| | ||| || ||
Sbjct 564 TGTCGATTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCC 623
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
||| ||||||| ||| ||||| || || || || ||||||||||| || ||||| |||||
Sbjct 624 AGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTT 683
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||||| | || || || | || || || || || || | ||
Sbjct 684 AACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGT 743
Query 104542 TTTTACAAATATCTGCATT 104560
|| ||||| || ||||||
Sbjct 744 CTTCACAAAAATTTGCATT 762
>seq21568
Length=652
Score = 109 bits (120), Expect = 1e-18
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||||||||| || |||| | ||| | ||| || || | ||||||||||
Sbjct 119 GTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 178
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | ||||||||||| ||||| || || || || || ||||||||||| ||
Sbjct 179 GCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTC 238
Query 104483 ACATT 104487
|||||
Sbjct 239 ACATT 243
>seq122851
Length=247
Score = 95.1 bits (104), Expect = 3e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| || || ||||| || |||||||| || || | ||||| ||||||||
Sbjct 104 AAGCACCAAATGCAACGTCGATTCCTTTTGAATATTGTAATCTGCCAGAGTCCTACCGTC 45
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448
||| ||||| || ||||||||||| | ||||||||| |||||
Sbjct 44 TTCAAGTTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGG 3
>seq299969
Length=1347
Score = 91.5 bits (100), Expect = 3e-13
Identities = 207/309 (67%), Gaps = 2/309 (1%)
Strand=Plus/Minus
Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750
||||| ||| | || || || || || ||| || | | || ||| |||||||||
Sbjct 309 AACCCCGATCGCTTCTGCATGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAG 250
Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810
| |||| || || || ||||||| || ||||| ||||| || | ||| | ||
Sbjct 249 AAAGCCGAAGCCTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGCCAT 190
Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870
||| || |||| | || || | | || || || | ||||||| || || ||
Sbjct 189 TGGGAATCCTTAACTTCCGACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTTCGCT 130
Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG-TTCTGTCAAGAGGTACAGAT 268929
| | |||||| |||||| || ||||| | | || | ||| |||| || || |
Sbjct 129 GCTTCTGATGGCATCGTTTTGGAGAATCTCGCCG-GACGCTTCATGAAAGAAGTTCAAGT 71
Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989
||||||||||| || || |||||||| || || || || ||||| || || |||||
Sbjct 70 GGCTGAAGCCAGAGCCTTCTATGGATTCCAAATTGCGATCGAGAATATCCACTCTGAGAT 11
Query 268990 GTACAGTCT 268998
|||||||||
Sbjct 10 GTACAGTCT 2
>seq124980
Length=249
Score = 89.7 bits (98), Expect = 1e-12
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||| || || || || | || ||||||||||| || || ||||| | |||||||
Sbjct 150 AGCCGTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGG 91
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| || || ||||| || || ||||| || | | || ||||| || || ||||||||
Sbjct 90 CCATCCTCAAGTTGCTTGCCGGCAAAGATCAATCGTTGCTGATCCGGGGGAATTCCTTCC 31
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490
|||||||| ||||| || || || || ||
Sbjct 30 TTATCCTGGATCTTGGCCTTGACGTTGTC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1146897298683296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |