Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq279770 163 7e-35 seq281289 161 2e-34 seq48980 136 9e-27 seq281664 127 5e-24 seq126021 122 2e-22 seq280556 111 4e-19 seq21568 109 1e-18 seq122851 95.1 3e-14 seq299969 91.5 3e-13 seq124980 89.7 1e-12 >seq279770 Length=767 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | || | ||| || | ||| | |||||||| ||||||||||| ||||| Sbjct 639 ATACCCCCACGAAGACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCG 580 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||||| |||||| || || || || ||||||||||| || |||||||||||||| Sbjct 579 GCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGT 520 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || || || || || ||||| || | ||||| | ||| Sbjct 519 GGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCC 460 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 459 ACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 156 bits (172), Expect = 1e-32 Identities = 168/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || ||||| || | ||| | ||||||||| ||||| ||||| || || | || |||| Sbjct 399 AGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGG 340 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| || |||||||| || ||||||||||| || || || || || ||| Sbjct 339 CCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCT 280 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGT 104518 ||||| ||||||||||| |||||||| || | || || ||| ||| ||||| || Sbjct 279 TTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGG 223 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || |||||||| || || ||||| Sbjct 222 GTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq281289 Length=787 Score = 161 bits (178), Expect = 2e-34 Identities = 177/234 (76%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || | ||| ||||| ||||| ||||||||||| ||||| Sbjct 783 ATTCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCC 724 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | ||| | || ||||| |||||||| ||||| |||||||| ||||| || ||||| Sbjct 723 GCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGG 664 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || ||||| |||||||| || ||||| || || ||||| || | |||||| ||| | Sbjct 663 GGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---T 607 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||||| || || || |||||||| || ||||| || || || |||||| Sbjct 606 TCCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || ||||| || | || |||| ||| || || || || |||||| Sbjct 522 GTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCGAGCTGCTTTCCA 463 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| ||||| || || || ||||| ||||| |||||||||||||| || || || Sbjct 462 GCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTGAATTTTGGCCTTC 403 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | ||| ||||| || || || || || || || || ||| Sbjct 402 ACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTT 343 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 342 TTCACAAAGATTTGCAT 326 >seq48980 Length=3483 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || ||||| | || || || ||||| || || ||||| | || |||| | Sbjct 1041 AGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGA 982 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || | || || || || ||||| || | ||| || || || |||||||| || Sbjct 981 CCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCC 922 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||||||||||||||| || ||||| || | |||||| | || ||||| || || Sbjct 921 TTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTT 862 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| || ||||| ||||| || || |||||||| |||| Sbjct 861 ATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTGT 819 >seq281664 Length=792 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || |||| || || || || ||||| || || |||||| Sbjct 124 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGCTTTCCA 183 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||| || || ||||| |||||||| || ||||| || ||||| || Sbjct 184 GCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTA 243 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | || ||||| | || || ||||| || || || || Sbjct 244 ACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTC 303 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 304 TTGACAAAGATCTGCATT 321 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || ||||| || || ||||| | ||||||| ||||| || Sbjct 568 ACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCCTCC 627 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||||||||| || || || |||||||| || || || || ||||| || |||||| Sbjct 628 AACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCCTGA 687 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | || || || || ||||| | || || ||||| Sbjct 688 ATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTT 747 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || ||||| Sbjct 748 CCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq126021 Length=250 Score = 122 bits (134), Expect = 2e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || || || || ||||| || || || Sbjct 246 ATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 187 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||| || | ||| ||||| || || || || ||||| || | ||| || ||||| || Sbjct 186 GCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGG 127 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || || ||||| || || |||||||| ||||| ||||| || | || || ||| | Sbjct 126 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCT---T 70 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||||||||||||||| || || || ||||| || || || |||||| Sbjct 69 TCAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCATT 16 >seq280556 Length=777 Score = 111 bits (122), Expect = 4e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| || ||||| ||||| || | || ||| || || ||||| | ||| || || Sbjct 564 TGTCGATTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCC 623 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| ||||||| ||| ||||| || || || || ||||||||||| || ||||| ||||| Sbjct 624 AGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTT 683 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||| | || || || | || || || || || || | || Sbjct 684 AACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGT 743 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 744 CTTCACAAAAATTTGCATT 762 >seq21568 Length=652 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||| || |||| | ||| | ||| || || | |||||||||| Sbjct 119 GTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 178 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||||||||| ||||| || || || || || ||||||||||| || Sbjct 179 GCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTTGCCTTC 238 Query 104483 ACATT 104487 ||||| Sbjct 239 ACATT 243 >seq122851 Length=247 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| || || ||||| || |||||||| || || | ||||| |||||||| Sbjct 104 AAGCACCAAATGCAACGTCGATTCCTTTTGAATATTGTAATCTGCCAGAGTCCTACCGTC 45 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| ||||| || ||||||||||| | ||||||||| ||||| Sbjct 44 TTCAAGTTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGG 3 >seq299969 Length=1347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 207/309 (67%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAA 268750 ||||| ||| | || || || || || ||| || | | || ||| ||||||||| Sbjct 309 AACCCCGATCGCTTCTGCATGTTCCCGATTCAGTATCCTCAAATCTGGGAGATGTACAAG 250 Query 268751 CAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGAT 268810 | |||| || || || ||||||| || ||||| ||||| || | ||| | || Sbjct 249 AAAGCCGAAGCCTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCACAGGACCTTCGCCAT 190 Query 268811 TGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 ||| || |||| | || || | | || || || | ||||||| || || || Sbjct 189 TGGGAATCCTTAACTTCCGACGAGAAACACTTCATCACTCACGTTCTTGCCTTCTTCGCT 130 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG-TTCTGTCAAGAGGTACAGAT 268929 | | |||||| |||||| || ||||| | | || | ||| |||| || || | Sbjct 129 GCTTCTGATGGCATCGTTTTGGAGAATCTCGCCG-GACGCTTCATGAAAGAAGTTCAAGT 71 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||||||||||| || || |||||||| || || || || ||||| || || ||||| Sbjct 70 GGCTGAAGCCAGAGCCTTCTATGGATTCCAAATTGCGATCGAGAATATCCACTCTGAGAT 11 Query 268990 GTACAGTCT 268998 ||||||||| Sbjct 10 GTACAGTCT 2 >seq124980 Length=249 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || ||||||||||| || || ||||| | ||||||| Sbjct 150 AGCCGTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGG 91 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || ||||| || || ||||| || | | || ||||| || || |||||||| Sbjct 90 CCATCCTCAAGTTGCTTGCCGGCAAAGATCAATCGTTGCTGATCCGGGGGAATTCCTTCC 31 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490 |||||||| ||||| || || || || || Sbjct 30 TTATCCTGGATCTTGGCCTTGACGTTGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146897298683296