Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq281664 82.4 6e-11 >seq281664 Length=792 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| || |||||| ||||||||||||||||| || ||| || || |||||||| Sbjct 118 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTCCTTCCATCTTCCAGCTG 176 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || |||||||| || || | | |||||||||| ||||| Sbjct 177 CTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTT 236 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || ||||| | | |||| ||| | || ||||| || || || Sbjct 237 TGCCTTAACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGT 296 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 297 CAGGGTCTTGACAAAGATCTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419684755297112