Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq104448 376 1e-99 seq114387 230 1e-55 seq155200 183 1e-41 seq163458 145 3e-30 >seq104448 Length=231 Score = 376 bits (416), Expect = 1e-99 Identities = 222/231 (96%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48983 CTCCGCTACCCAGGTACAGCGTCAGCAAGAGGCTGAACGTCTGGACCGAATCCGTCGAGG 49042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 CTCCGCTACCCAGGTACAGCGTCAGCAAGAGGCTGAACGTCTGGACCGAATCCGTCGAGG 172 Query 49043 GGAAGTCACCGATGTGACTCCGGTCCCGGCGGCCCCAAAGCGCTCCGAGCAGATGGGGCT 49102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 171 TGAAGTCACCGATGTGACTCCGGTCCCGGCGGCCCCAAAGCGCTCCGAGCAGATGGGTCT 112 Query 49103 GGACCCGGCTACTGGGCCACTTTCTGGTGCTGCTGCGCAGGCCGTGGACAGTGGCGCAAC 49162 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 111 GGACCCGGCTACTGGGCCGCTGTCTGGTGCTGCTGCGCAGGCCGTGGACAGTGGCGCAAC 52 Query 49163 TGACCAGTTGGTGCAGCAGGCCGCGCTCCAGCAGGCTGCCGAGGAGGCACA 49213 ||||||| ||||||| || ||||||||||||||||| ||||||||||| || Sbjct 51 TGACCAGATGGTGCAACAAGCCGCGCTCCAGCAGGCAGCCGAGGAGGCGCA 1 >seq114387 Length=239 Score = 230 bits (254), Expect = 1e-55 Identities = 178/220 (81%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 45453 AAATGCAATCTCGCTTTGCCGACATGAACAGCCGGANNNNNNNNNNNNNNNNNNNNNNNN 45512 |||||||||||||||||||||||||||||||||||| Sbjct 239 AAATGCAATCTCGCTTTGCCGACATGAACAGCCGGACCAACATCGCATACGCAGAAATGC 180 Query 45513 AGATCAGCGAGTACACCGCGAAGATGCAGAACGCCGTACAGCAGGCGCAGATCGCTCTGG 45572 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 179 AGATCAGCGAGTACACCGCGAAGATGCAGAACGCCGTACAGCAGGCGCAGATCGCCCTGG 120 Query 45573 AGGCGGCGAAGGCCCTGGGGCAGTACACCGCTCAGCTAGCGGCCGGCGCTCTGTCAGCGG 45632 |||| || |||||| |||||||||||||||| || || |||||||||||| |||| |||| Sbjct 119 AGGCAGCCAAGGCCTTGGGGCAGTACACCGCCCAACTCGCGGCCGGCGCTATGTCGGCGG 60 Query 45633 CGCACGTGTCGGCTAGTATCAGTGGCTCCGGCAGCGCGAG 45672 | || || ||||| || ||||||||||| || || || || Sbjct 59 CACATGTATCGGCCAGCATCAGTGGCTCTGGAAGTGCTAG 20 >seq155200 Length=283 Score = 183 bits (202), Expect = 1e-41 Identities = 202/267 (76%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 41096 ATGTATACGGCCTGCGGCTGGGCGATGAACAGTCGAGGTACTGAAGGTTTCAATACCTGT 41155 ||||| ||||| || ||||||||| ||||||| ||||| || || || ||||| ||||| Sbjct 264 ATGTACACGGCGTGTGGCTGGGCGGTGAACAGCCGAGGCACCGAGGGCTTCAACACCTGC 205 Query 41156 TGGGGTTATGACGACACCGGCCTGATGCGGGTCCATGCGTACAAAATGCGCTTGTCGCTG 41215 ||| ||||||||| |||||||||||| ||||||||||||||| ||| | |||||||| Sbjct 204 TGGACCTATGACGACGCCGGCCTGATGCAGGTCCATGCGTACAAGATGAGTCTGTCGCTG 145 Query 41216 GCGCCAGCAAAGAATCAGGGGCGCATCGAGAACGAATGGCAGTTCGATGA---CGAGGA- 41271 || || || |||| |||||||| | ||||| ||| | |||||||| || || Sbjct 144 GCCCCGGCGGAGAACCAGGGGCGACTGAAGAACACCTGGAATTTCGATGATCCAGACGAT 85 Query 41272 GCAGCGTGCCAAGCTCAATGCCTACCTTTCGAAGGTTTACAGCGCGTTGTCCGCCGGCGG 41331 |||||| || ||||| |||||||| || |||| || ||||| || ||| ||| Sbjct 84 GCAGCG----AAACTCAACGCCTACCTGTCCCAGGTCTATGGCGCGCTGACCGATGGCAC 29 Query 41332 CGCGCGTGAGTTGGCCATCATGTACAA 41358 ||| | || ||||||||| ||| || Sbjct 28 CGCCAGAGAACTGGCCATCAAGTATAA 2 >seq163458 Length=294 Score = 145 bits (160), Expect = 3e-30 Identities = 199/273 (73%), Gaps = 14/273 (5%) Strand=Plus/Minus Query 10557 GGTGTCCACGATCACCAGGCCTTGCGCCGGCATGATTGCGGCGAAGGTGCG---CTTGCG 10613 |||||| | | ||||||||||||| | | | |||||||| |||| |||||| Sbjct 277 GGTGTCGATCAGCACCAGGCCTTGCTCAAGGTCCAGCGCGGCGAACGTGCTGGACTTGCG 218 Query 10614 GCGGGTGAACGCGCGCGGTAGGAGGGTCTGGACGATCTCGTCCTTCAACTGGTCGCGCTC 10673 |||| || || || || || |||||||||||||||||||| | |||||||||||| Sbjct 217 AA---TGAAAGCCCGTGGCAGCAGCGTCTGGACGATCTCGTCCTTGAGCTGGTCGCGCTC 161 Query 10674 TTTCTTGTAGACCTTGCGCTGCTGG--GTTTCCTCGATCTCTTCGACCTTCTCCTTCAGT 10731 |||||| | ||||||||| |||| | || ||||| | ||||||||||| |||| Sbjct 160 CTTCTTGAACACCTTGCGCATCTGGTCGGTT--TCGATTTGCTCGACCTTCTCGGCCAGT 103 Query 10732 GCTTCGTTGACCACGCTGCCAGGCAGGATCTTCTCCTCCTTGCGGCAGCAGATCAGCCAG 10791 | ||| || |||||||| ||||| | ||||| ||| ||| | |||| ||| | Sbjct 102 TCGTCGCGCACTACGCTGCCGGGCAGCAGGCGCTCCTGCTTTCGGGTGGAGATGAGCAGG 43 Query 10792 AATCCGTTCGCCTCGCGT--ACCAGCGGTGCGT 10822 || ||| || || |||| ||||||||||||| Sbjct 42 AAGCCG--CGGCTGGCGTGCACCAGCGGTGCGT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 207723884778592