Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq273947 138 1e-27 seq220814 105 7e-18 seq218924 102 9e-17 >seq273947 Length=700 Score = 138 bits (152), Expect = 1e-27 Identities = 300/444 (68%), Gaps = 20/444 (5%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | |||||||||||| || ||||| ||||| |||| |||||| || || Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||||||||||| | ||| | ||||| | | || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| || |||||||| || ||||| | ||| || || | |||||| || | | Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATT----TTTCTATAGAGACGGCTTC---AAC 21417 ||||| | || ||| | | || | | |||||| |||||||| ||| Sbjct 420 GCAACAGGCAAGGC----ATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAAC 365 Query 21418 AATTATATTTATTATCCTAGAT--GTACTAGGGGGATACAATAATTGTTTAAACATCAAA 21475 ||| ||| | || ||| ||| | | | || | | ||| |||| Sbjct 364 AATCTCATTCA-----CTCGATTCTCACTCAGTTTCTTCCTCAACAATGAATACAACAAA 310 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || |||||||| ||||| | ||| || || | || || ||||| || ||||| | Sbjct 309 CAAGCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGT 250 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||||||||| | ||||| ||||| || || || ||| | ||| ||||| ||||| Sbjct 249 CCAGGCATTAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAA 191 Query 21595 AATGCCCTCAACGGCAGCAAATGC 21618 || || ||||| ||||||||| Sbjct 190 GATTCCTTCAACACAAGCAAATGC 167 >seq220814 Length=412 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| |||| ||||||||| || || ||||| ||||| || | |||||| || | Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||||||||||| | || | ||||| | | | || | || | Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACC 21357 || ||||||| ||||||||||| ||||| | ||| || || | |||||| || Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49 >seq218924 Length=406 Score = 102 bits (112), Expect = 9e-17 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| |||||| |||||||||||||| | |||||||| || || || ||||| || | Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586 | ||||| || ||||||| || | ||||||||||| || || || ||| | || ||| Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGA-GCAGAAACTACCT 208 Query 21587 GAAAAGAAAATGCCCTCAAC 21606 || |||||||| |||||||| Sbjct 209 GAGAAGAAAATTCCCTCAAC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529872183538880