Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 138 1e-27
seq220814 105 7e-18
seq218924 102 9e-17
>seq273947
Length=700
Score = 138 bits (152), Expect = 1e-27
Identities = 300/444 (68%), Gaps = 20/444 (5%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||| || | |||||||||||| || ||||| ||||| |||| |||||| || ||
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| ||||||||||||||| | ||| | ||||| | | || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364
|||||||| || |||||||| || ||||| | ||| || || | |||||| || | |
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATT----TTTCTATAGAGACGGCTTC---AAC 21417
||||| | || ||| | | || | | |||||| |||||||| |||
Sbjct 420 GCAACAGGCAAGGC----ATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAAC 365
Query 21418 AATTATATTTATTATCCTAGAT--GTACTAGGGGGATACAATAATTGTTTAAACATCAAA 21475
||| ||| | || ||| ||| | | | || | | ||| ||||
Sbjct 364 AATCTCATTCA-----CTCGATTCTCACTCAGTTTCTTCCTCAACAATGAATACAACAAA 310
Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535
|| |||||||| ||||| | ||| || || | || || ||||| || ||||| |
Sbjct 309 CAAGCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGT 250
Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594
|| ||||||||||| | ||||| ||||| || || || ||| | ||| ||||| |||||
Sbjct 249 CCAGGCATTAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAA 191
Query 21595 AATGCCCTCAACGGCAGCAAATGC 21618
|| || ||||| |||||||||
Sbjct 190 GATTCCTTCAACACAAGCAAATGC 167
>seq220814
Length=412
Score = 105 bits (116), Expect = 7e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||| |||| ||||||||| || || ||||| ||||| || | |||||| || |
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304
||||| ||||||||||||||| | || | ||||| | | | || | || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACC 21357
|| ||||||| ||||||||||| ||||| | ||| || || | |||||| ||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49
>seq218924
Length=406
Score = 102 bits (112), Expect = 9e-17
Identities = 108/140 (77%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527
||| |||||| |||||||||||||| | |||||||| || || || ||||| || |
Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149
Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCT 21586
| ||||| || ||||||| || | ||||||||||| || || || ||| | || |||
Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGA-GCAGAAACTACCT 208
Query 21587 GAAAAGAAAATGCCCTCAAC 21606
|| |||||||| ||||||||
Sbjct 209 GAGAAGAAAATTCCCTCAAC 228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529872183538880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |