Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq273947 201 1e-46 >seq273947 Length=700 Score = 201 bits (222), Expect = 1e-46 Identities = 412/605 (68%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 ||||| ||||| || || | |||||| || ||||| || || |||| |||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||| ||||| ||||||||| ||||| | | || || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||| || | || || | ||||| || || ||| || || || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 33253 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | || | |||| ||||| || | | || | | ||| |||||| || || Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 |||||| || ||||||||||||| ||| | || || || || |||||||| ||||| Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || ||||| ||||| | ||| || ||||| ||| || || |||||||||||||| Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTC 182 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACT 33487 || |||||| || | || | ||| || ||| | | |||||| ||||||| Sbjct 181 AACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCACT 126 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 || |||||||| |||||||| || ||||| || | ||| || || ||| ||| | || Sbjct 125 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-AT 67 Query 33548 AG-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 | | || || || |||||| | |||||| |||| | |||||| ||||| || || Sbjct 66 CGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAG 7 Query 33607 TGAAT 33611 || || Sbjct 6 TGGAT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620571341673920