Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 201 1e-46
>seq273947
Length=700
Score = 201 bits (222), Expect = 1e-46
Identities = 412/605 (68%), Gaps = 12/605 (2%)
Strand=Plus/Minus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
||||| ||||| || || | |||||| || ||||| || || |||| |||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
||||| ||||||| ||||| ||||||||| ||||| | | || || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
|||||||| || || ||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252
||| || | || || | ||||| || || ||| || || || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 33253 GATCTAACG-GTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311
| || | |||| ||||| || | | || | | ||| |||||| || ||
Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302
Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371
|||||| || ||||||||||||| ||| | || || || || |||||||| |||||
Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242
Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431
|| ||||| ||||| | ||| || ||||| ||| || || ||||||||||||||
Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTC 182
Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACT 33487
|| |||||| || | || | ||| || ||| | | |||||| |||||||
Sbjct 181 AACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCACT 126
Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547
|| |||||||| |||||||| || ||||| || | ||| || || ||| ||| | ||
Sbjct 125 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-AT 67
Query 33548 AG-tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606
| | || || || |||||| | |||||| |||| | |||||| ||||| || ||
Sbjct 66 CGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGAG 7
Query 33607 TGAAT 33611
|| ||
Sbjct 6 TGGAT 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620571341673920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |