Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_007051.1 Length=41318 Score E Sequences producing significant alignments: (Bits) Value seq148874 201 3e-47 seq8319 107 5e-19 seq89743 93.3 1e-14 >seq148874 Length=275 Score = 201 bits (222), Expect = 3e-47 Identities = 207/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 10069 TCAATTGATTGGGAACAAGCGCTTGCAGGTGTAGCAAAAACAACAAACATGAGTGGTTCA 10128 || || |||||||||||||| | |||||||| || |||||||| |||||||||||| Sbjct 271 TCTATCGATTGGGAACAAGCTTTAGCAGGTGTGGCTAAAACAACTAACATGAGTGGTAGC 212 Query 10129 GGGCTTAAGAAAATGGGCGATGAAATCACTTCTATGAGCAACAAAATGCCGTTTGCAGCA 10188 | | || ||||||||| |||| || ||| ||||| || | |||||| || || ||| Sbjct 211 GAATTAAATAAAATGGGCAATGAGATTACTAAAATGAGTAATACAATGCCATTCGCTGCA 152 Query 10189 ACTGAGATTGCCGGTGTAGCGGAAAGTGCAGGTCAATTAGGTGTTAAGAAGAAAGACATC 10248 || || || || |||||||| ||| ||| || ||| ||||| | ||||| |||| ||| Sbjct 151 ACAGAAATAGCAGGTGTAGCAGAAGCTGCGGGACAACTAGGTATCAAGAAACAAGATATC 92 Query 10249 ACGGCTTTCACGAAAACAATGCTTAACATGGGTGTTGCGACTAACCTGACAGCTGATGAA 10308 || | ||||| | ||||||| | ||| | ||||| || |||||||| || || || ||| Sbjct 91 ACTTCATTCACTAGAACAATGATGAACTTAGGTGTAGCTACTAACCTTACTGCAGACGAA 32 Query 10309 GCTGCGACGGAATTTGCTCGATTTGCAAATG 10339 ||||| || || ||||| ||||||| |||| Sbjct 31 GCTGCAACAGAGTTTGCAAGATTTGCTAATG 1 >seq8319 Length=252 Score = 107 bits (118), Expect = 5e-19 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 9808 GCAATCACTCAACAAAAAATTAAGATGAATGATCTTGAGGCCGAAATAAAAGAAACATC- 9866 |||||||||||||||||||||||||||||||| |||||| || || | ||||| | Sbjct 1 GCAATCACTCAACAAAAAATTAAGATGAATGAACTTGAGAGTGAGCTAGACCAAACAACG 60 Query 9867 AAATGCATATAAGCAATTAACTGTAGCACAACAAAATGCTCAACGTTTAAGCGCAACGGG 9926 || || ||||| |||||| || ||||| ||| || ||||||||| | | || Sbjct 61 CAAAGC-TATAAACAATTAGAAACAGAACAACGAAACGCGCAACGTTTAGCATCTAGTGG 119 Query 9927 CTTTGGTCGAAGTATACAAGCTGTAGATAAATATAAGGACTCTATCCGGAATGTAG 9982 |||||| ||||||| ||| ||| |||| ||||| || || || | ||||||| Sbjct 120 TTTTGGTAGAAGTATTCAAAGTGTTAATAAGTATAAAGATTCAATTAGAAATGTAG 175 >seq89743 Length=219 Score = 93.3 bits (102), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 14128 ACTGGCGGTTTAATTAAAAACGAAGGTTGGTATAATCTTGCTGAAGGTGGGCATCCGGAA 14187 |||||||| ||||| ||| | |||||||| || |||| |||||||| |||| ||| Sbjct 49 ACTGGCGGCTTAATCAAATCTGCTGGTTGGTACAACATTGCAGAAGGTGGTTATCCTGAA 108 Query 14188 TGGATTATCCCGACTGATCCCGCAATGGCAAGTGAGGCAATGAAGCTATTAGCACTTGCA 14247 ||||| || || || ||||| | | ||||| || ||||| | ||||||||||| Sbjct 109 TGGATAATTCCAACCGATCCATCTAGACGTAGTGACGCTATGAAAATGCTAGCACTTGCA 168 Query 14248 GCGCAAGATATCGAT---AGACGTAAAACAACAGGTAATAAGCGACCGAA 14294 || |||||||| ||| | | ||| || | ||| ||||| || || || Sbjct 169 GCACAAGATATAGATAAGAAAAGTAGTACTAGAGGAAATAAACGGCCTAA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131617389112320