Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_007051.1
Length=41318
Score E
Sequences producing significant alignments: (Bits) Value
seq148874 201 3e-47
seq8319 107 5e-19
seq89743 93.3 1e-14
>seq148874
Length=275
Score = 201 bits (222), Expect = 3e-47
Identities = 207/271 (76%), Gaps = 0/271 (0%)
Strand=Plus/Minus
Query 10069 TCAATTGATTGGGAACAAGCGCTTGCAGGTGTAGCAAAAACAACAAACATGAGTGGTTCA 10128
|| || |||||||||||||| | |||||||| || |||||||| ||||||||||||
Sbjct 271 TCTATCGATTGGGAACAAGCTTTAGCAGGTGTGGCTAAAACAACTAACATGAGTGGTAGC 212
Query 10129 GGGCTTAAGAAAATGGGCGATGAAATCACTTCTATGAGCAACAAAATGCCGTTTGCAGCA 10188
| | || ||||||||| |||| || ||| ||||| || | |||||| || || |||
Sbjct 211 GAATTAAATAAAATGGGCAATGAGATTACTAAAATGAGTAATACAATGCCATTCGCTGCA 152
Query 10189 ACTGAGATTGCCGGTGTAGCGGAAAGTGCAGGTCAATTAGGTGTTAAGAAGAAAGACATC 10248
|| || || || |||||||| ||| ||| || ||| ||||| | ||||| |||| |||
Sbjct 151 ACAGAAATAGCAGGTGTAGCAGAAGCTGCGGGACAACTAGGTATCAAGAAACAAGATATC 92
Query 10249 ACGGCTTTCACGAAAACAATGCTTAACATGGGTGTTGCGACTAACCTGACAGCTGATGAA 10308
|| | ||||| | ||||||| | ||| | ||||| || |||||||| || || || |||
Sbjct 91 ACTTCATTCACTAGAACAATGATGAACTTAGGTGTAGCTACTAACCTTACTGCAGACGAA 32
Query 10309 GCTGCGACGGAATTTGCTCGATTTGCAAATG 10339
||||| || || ||||| ||||||| ||||
Sbjct 31 GCTGCAACAGAGTTTGCAAGATTTGCTAATG 1
>seq8319
Length=252
Score = 107 bits (118), Expect = 5e-19
Identities = 131/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 9808 GCAATCACTCAACAAAAAATTAAGATGAATGATCTTGAGGCCGAAATAAAAGAAACATC- 9866
|||||||||||||||||||||||||||||||| |||||| || || | ||||| |
Sbjct 1 GCAATCACTCAACAAAAAATTAAGATGAATGAACTTGAGAGTGAGCTAGACCAAACAACG 60
Query 9867 AAATGCATATAAGCAATTAACTGTAGCACAACAAAATGCTCAACGTTTAAGCGCAACGGG 9926
|| || ||||| |||||| || ||||| ||| || ||||||||| | | ||
Sbjct 61 CAAAGC-TATAAACAATTAGAAACAGAACAACGAAACGCGCAACGTTTAGCATCTAGTGG 119
Query 9927 CTTTGGTCGAAGTATACAAGCTGTAGATAAATATAAGGACTCTATCCGGAATGTAG 9982
|||||| ||||||| ||| ||| |||| ||||| || || || | |||||||
Sbjct 120 TTTTGGTAGAAGTATTCAAAGTGTTAATAAGTATAAAGATTCAATTAGAAATGTAG 175
>seq89743
Length=219
Score = 93.3 bits (102), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 14128 ACTGGCGGTTTAATTAAAAACGAAGGTTGGTATAATCTTGCTGAAGGTGGGCATCCGGAA 14187
|||||||| ||||| ||| | |||||||| || |||| |||||||| |||| |||
Sbjct 49 ACTGGCGGCTTAATCAAATCTGCTGGTTGGTACAACATTGCAGAAGGTGGTTATCCTGAA 108
Query 14188 TGGATTATCCCGACTGATCCCGCAATGGCAAGTGAGGCAATGAAGCTATTAGCACTTGCA 14247
||||| || || || ||||| | | ||||| || ||||| | |||||||||||
Sbjct 109 TGGATAATTCCAACCGATCCATCTAGACGTAGTGACGCTATGAAAATGCTAGCACTTGCA 168
Query 14248 GCGCAAGATATCGAT---AGACGTAAAACAACAGGTAATAAGCGACCGAA 14294
|| |||||||| ||| | | ||| || | ||| ||||| || || ||
Sbjct 169 GCACAAGATATAGATAAGAAAAGTAGTACTAGAGGAAATAAACGGCCTAA 218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131617389112320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |