Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_007059.1 Length=43114 Score E Sequences producing significant alignments: (Bits) Value seq224806 251 2e-62 seq178946 179 1e-40 >seq224806 Length=425 Score = 251 bits (278), Expect = 2e-62 Identities = 309/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 23926 TCGATGAATCAAGACTTATATCAAGATACTTTGTACGGTCAACGTGTTGGAAACTATAAA 23985 || ||||| |||||||| ||||||||||| | || || |||||||| || |||||| | Sbjct 423 TCAATGAACCAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCA 364 Query 23986 GACTATGGCATGTACTGGATTAAAAACGAAGTTAAACCGGATGCAATCATAGAGTTTCAT 24045 || || || | || ||| ||||||| | || ||||| |||| || |||| || || Sbjct 363 GATTACGGTTTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCAC 304 Query 24046 TTAGATTCTGCTAGTCCGCAAGCAAGTGGCGGGCATGTAATCATTAGCGACCGTTTCCCA 24105 |||||| |||||||||| |||||||||||||| ||||| || | |||||| | | || Sbjct 303 TTAGATGCTGCTAGTCCACAAGCAAGTGGCGGACATGTCATTGTAAGCGACAGATATCCT 244 Query 24106 GCTGATGACATTGACAAGGCATTAAGTAGTGCATTAGATAAAACAGTAGGTAAAATAAGA 24165 || || || || ||||| || || ||| || ||| ||| ||||| || ||||| ||| Sbjct 243 GCAGACGATATAGACAAAGCGGTATCTAGCGCTCTAGGTAAGACAGTTGGCAAAATTAGA 184 Query 24166 GGCGTGACACCTAGAGGGGATTTATTGAACGCTAACGTGTCCGCTGACCTTAATCTTAAT 24225 ||||||||||||||| |||||||| || |||||||| | | | || ||| | ||| Sbjct 183 GGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAAT 124 Query 24226 TATCGTTTAATCGAATTAGGTTTTATCACATCGACGAAAGATTTAAACTACATTAAAAAT 24285 ||| | |||||||| ||||||||||| || | || ||| | |||| || | | Sbjct 123 TATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGACTATATCACTACA 64 Query 24286 AATTTAGACAGCTTCACGAAACGGATTGCTGAGGCCATTAACGGCAGACAAATTGATGCA 24345 | |||| || || || || || ||||| ||||| || || || || ||||| |||| Sbjct 63 CACCTAGATAGTTTTACTAAGCGTATTGCAGAGGCTATCAATGGTAGGCAAATCAATGCG 4 Query 24346 CC 24347 || Sbjct 3 CC 2 >seq178946 Length=318 Score = 179 bits (198), Expect = 1e-40 Identities = 136/159 (86%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 34347 AACGCTGAACCTTCTAATACGTTTGAAACAAAGATTAGACATTCACCTTCAATAACAATT 34406 |||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||| Sbjct 318 AACGCTGAGCCTTCTAATACATTCGAAACCAAGATTAGACATTCACCTTCAATCACAATT 259 Query 34407 AACAATAAGAAATTTGCAAATCCTAGCATTACGGACGTAGTAGAAGCAATTAGAAATGGA 34466 ||| |||||||||||| || || || || | | |||||||||||||||||||| ||| Sbjct 258 AACGATAAGAAATTTGTGAACCCAAGTATCAGTCAAGTAGTAGAAGCAATTAGAAACGGA 199 Query 34467 AACTAAAAATTAATTAAAAGGACGGTATTTAATTATGAA 34505 |||||| || || ||||||||||||| | ||||||||| Sbjct 198 AACTAATAA-AAAATAAAAGGACGGTAATCAATTATGAA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137343765828544