Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_007059.1
Length=43114
Score E
Sequences producing significant alignments: (Bits) Value
seq224806 251 2e-62
seq178946 179 1e-40
>seq224806
Length=425
Score = 251 bits (278), Expect = 2e-62
Identities = 309/422 (73%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 23926 TCGATGAATCAAGACTTATATCAAGATACTTTGTACGGTCAACGTGTTGGAAACTATAAA 23985
|| ||||| |||||||| ||||||||||| | || || |||||||| || |||||| |
Sbjct 423 TCAATGAACCAAGACTTGTATCAAGATACGCTATATGGACAACGTGTAGGTAACTATTCA 364
Query 23986 GACTATGGCATGTACTGGATTAAAAACGAAGTTAAACCGGATGCAATCATAGAGTTTCAT 24045
|| || || | || ||| ||||||| | || ||||| |||| || |||| || ||
Sbjct 363 GATTACGGTTTATATTGGGTTAAAAAGAACGTGAAACCTGATGTGATTGTAGAATTCCAC 304
Query 24046 TTAGATTCTGCTAGTCCGCAAGCAAGTGGCGGGCATGTAATCATTAGCGACCGTTTCCCA 24105
|||||| |||||||||| |||||||||||||| ||||| || | |||||| | | ||
Sbjct 303 TTAGATGCTGCTAGTCCACAAGCAAGTGGCGGACATGTCATTGTAAGCGACAGATATCCT 244
Query 24106 GCTGATGACATTGACAAGGCATTAAGTAGTGCATTAGATAAAACAGTAGGTAAAATAAGA 24165
|| || || || ||||| || || ||| || ||| ||| ||||| || ||||| |||
Sbjct 243 GCAGACGATATAGACAAAGCGGTATCTAGCGCTCTAGGTAAGACAGTTGGCAAAATTAGA 184
Query 24166 GGCGTGACACCTAGAGGGGATTTATTGAACGCTAACGTGTCCGCTGACCTTAATCTTAAT 24225
||||||||||||||| |||||||| || |||||||| | | | || ||| | |||
Sbjct 183 GGCGTGACACCTAGAAACGATTTATTAAATGCTAACGTTACTGGACAACTCAATTTAAAT 124
Query 24226 TATCGTTTAATCGAATTAGGTTTTATCACATCGACGAAAGATTTAAACTACATTAAAAAT 24285
||| | |||||||| ||||||||||| || | || ||| | |||| || | |
Sbjct 123 TATAGATTAATCGAGTTAGGTTTTATAACTAGTAAAAAGGATATGGACTATATCACTACA 64
Query 24286 AATTTAGACAGCTTCACGAAACGGATTGCTGAGGCCATTAACGGCAGACAAATTGATGCA 24345
| |||| || || || || || ||||| ||||| || || || || ||||| ||||
Sbjct 63 CACCTAGATAGTTTTACTAAGCGTATTGCAGAGGCTATCAATGGTAGGCAAATCAATGCG 4
Query 24346 CC 24347
||
Sbjct 3 CC 2
>seq178946
Length=318
Score = 179 bits (198), Expect = 1e-40
Identities = 136/159 (86%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 34347 AACGCTGAACCTTCTAATACGTTTGAAACAAAGATTAGACATTCACCTTCAATAACAATT 34406
|||||||| ||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 318 AACGCTGAGCCTTCTAATACATTCGAAACCAAGATTAGACATTCACCTTCAATCACAATT 259
Query 34407 AACAATAAGAAATTTGCAAATCCTAGCATTACGGACGTAGTAGAAGCAATTAGAAATGGA 34466
||| |||||||||||| || || || || | | |||||||||||||||||||| |||
Sbjct 258 AACGATAAGAAATTTGTGAACCCAAGTATCAGTCAAGTAGTAGAAGCAATTAGAAACGGA 199
Query 34467 AACTAAAAATTAATTAAAAGGACGGTATTTAATTATGAA 34505
|||||| || || ||||||||||||| | |||||||||
Sbjct 198 AACTAATAA-AAAATAAAAGGACGGTAATCAATTATGAA 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137343765828544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |