Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq273947 197 4e-45 seq218924 120 8e-22 seq277126 96.9 9e-15 seq220814 95.1 3e-14 >seq273947 Length=700 Score = 197 bits (218), Expect = 4e-45 Identities = 368/527 (70%), Gaps = 25/527 (5%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT--TCATTCGCGGAAC 22492 ||||| ||||| ||||||||| | || ||||| ||| | ||| || || || || | Sbjct 101 AAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGACA--GCACGGAATCGTTTGCCGAGC 158 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATC 22551 || || | ||||||||| |||||||| || ||||| || || ||| || || | || Sbjct 159 GTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTCTTCTCAGGTAGC-TTCTGCTCCATT 217 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||| | |||||||||| | | ||||| || || || || ||||||||||| ||| Sbjct 218 TTCTGGTTGAAAAAACGTGGATTAATGCCTGGACTCACATTCTCAAATGAGTTGATTTCA 277 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT--ATCATTC 22669 ||||| |||||||||||| ||||||||| ||| || | ||| |||| | | Sbjct 278 CGAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTGTTGTAT-----TCATTGTTGAGGA 332 Query 22670 ATAAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 | |||| | | ||| | || ||| ||| |||| | || || || | || | Sbjct 333 AGAAAC-TGAGTGAGAATCGAGTGAATGAGATTGTTACCGAAGCCGTAGATATAGAGAGG 391 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 ||| | || || || || || || ||| |||| || |||| ||| | ||||| Sbjct 392 GAATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTGGAATGAATGGCGATTTGATGAGC 451 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATT---TCACTCGGTTAT-GCAAAGCA 22844 ||| ||| ||||||| || ||| | ||| || | | || ||| ||||| | Sbjct 452 CAATACATTGAATTTGTGGCCGATAG---ATTGGTTGGAGCTTTAGGGTATGGCAAA--A 506 Query 22845 T-TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCA 22903 | ||||| || ||||||||||| ||||||||| | |||||| | |||| ||||||| Sbjct 507 TCTATAATGTTCAAAATCCATTTGATTGGATGGAATTGATTTCATTGCAAGGGAAGACCA 566 Query 22904 ATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||||| |||||||||||||| ||||| ||||| ||| ||| ||| Sbjct 567 ATTTCTTTGAAAAAAGAGTTGGGGAATATCAAAAGGCATCTGTGATG 613 >seq218924 Length=406 Score = 120 bits (132), Expect = 8e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGT 22494 ||||| ||||| ||||||||| |||| ||||| ||| | | || ||||| || || Sbjct 306 AAGAAAAAGGCTGATTGGGCGTTGAAGTGGATTGACAGTACAGAATCGTTCGCTGAGCGG 247 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || | || || ||| ||||| || |||||||| || || || || | || || Sbjct 246 ATTTTGGCGTTCGCTTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTC 187 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| |||||||||||| | ||||| || ||||||| ||||||||||| ||| || Sbjct 186 TGGTTAAAAAAACGTGGGCTAATGCCTGGATTAACGTTCTCAAATGAGTTGATTTCAAGA 127 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 ||||| || |||||| |||||||| ||| || | ||| Sbjct 126 GATGAAGGGCTTCATTGTGATTTTGCTTGTTTGTTGTAT 88 >seq277126 Length=735 Score = 96.9 bits (106), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||| ||| | ||| | | || || |||||||||||||| |||||||| || Sbjct 307 CAGTTTTACGTAGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATG 248 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || ||||||||||| |||||||||||| || || || || |||||| | || |||||| Sbjct 247 GGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCAT 188 Query 111822 TTT 111824 || Sbjct 187 GTT 185 >seq220814 Length=412 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 |||| | || || ||||| ||||| ||| |||| || |||| || | ||||| Sbjct 15 ATTTGTGTGTGATGCGTTGCCAGTGGCTCTTGTTGGAATGAATGGGGATTTGATGAGCCA 74 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||| || ||||||| ||||| | | | | | || |||| || || || Sbjct 75 ATACATAGAATTTGTGACAGATAGGTTGGTTGGAGCCTTAGGGTATGAGAAAATCTACAA 134 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 ||| ||||||||||| |||||||| | |||||| | | || ||||| |||||||| Sbjct 135 CGTTCAAAATCCATTTGATTGGATGGAGTTGATTTCATTGCAGGGGAAGACTAATTTCTT 194 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || ||||||||||||||||| ||||| ||| ||| ||| Sbjct 195 TGAGAAAAGAGTTGGTGAATATCAAAAGGCATCTGTGATG 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298258468197584