Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 100 2e-16
seq126021 93.3 4e-14
seq281664 91.5 1e-13
seq280556 89.7 4e-13
>seq281289
Length=787
Score = 100 bits (110), Expect = 2e-16
Identities = 164/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343
|||||||| ||||| ||||| ||||| || ||||| || ||| | || ||| || |
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
| | ||| ||| |||| || || |||||| |||||||| || |||| ||
Sbjct 386 G--ATACTATTG-ACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGAC 442
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
|||||||| ||||||| ||| || || || | || |||| |||| | |||||||||
Sbjct 443 CAGCAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTAT 502
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514
||||| |||||||| || || | || ||||| | | || || || ||||
Sbjct 503 AACATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGGAA 554
>seq126021
Length=250
Score = 93.3 bits (102), Expect = 4e-14
Identities = 142/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344
|||||||||||| ||||||||||||||||| || || ||||| | ||| || |
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||| | | |||| || ||| || ||| || || ||||| | ||| ||||
Sbjct 76 TGACACAATCG-ACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATC 134
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
||||||| | || | ||| ||||| || | ||||||| || | |||||||| |
Sbjct 135 AGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACA 194
Query 115464 ACATTCAAAAAGAGTCTACT 115483
|||||||||| ||||| |||
Sbjct 195 ACATTCAAAAGGAGTCCACT 214
>seq281664
Length=792
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||||||||||||||| ||||| ||||| ||||| ||| | || |||||
Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| || ||||| || || || ||| || || ||||| ||||| || ||
Sbjct 716 GACACAATT-GACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 658
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
|| ||||| || | || || ||||| || || || | | ||| | || || || ||
Sbjct 657 ACAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAA 598
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
||| || || ||||||||| | ||| | || |||
Sbjct 597 CATCCAGAAGGAGTCTACTCTCCATCTTGTCTTG 564
>seq280556
Length=777
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342
||||||||||||||| || || | || |||||||| || || | ||| ||| | |
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| | ||| ||| | || ||| || || ||||||||||| |||| ||
Sbjct 702 AG--ATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGAC 645
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
|| ||||| | |||| || || || ||||| ||||||| || || | |||||||||
Sbjct 644 CAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTAT 585
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||||||||||| || || || | || ||||| || | | || |||||
Sbjct 584 AACATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGG 535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423762336005440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |