Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq281289 100 2e-16 seq126021 93.3 4e-14 seq281664 91.5 1e-13 seq280556 89.7 4e-13 >seq281289 Length=787 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| ||||| ||||| ||||| || ||||| || ||| | || ||| || | Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | | ||| ||| |||| || || |||||| |||||||| || |||| || Sbjct 386 G--ATACTATTG-ACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGAC 442 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| ||||||| ||| || || || | || |||| |||| | ||||||||| Sbjct 443 CAGCAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTAT 502 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| |||||||| || || | || ||||| | | || || || |||| Sbjct 503 AACATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGGAA 554 >seq126021 Length=250 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| ||||||||||||||||| || || ||||| | ||| || | Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| | | |||| || ||| || ||| || || ||||| | ||| |||| Sbjct 76 TGACACAATCG-ACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATC 134 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| | || | ||| ||||| || | ||||||| || | |||||||| | Sbjct 135 AGCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACA 194 Query 115464 ACATTCAAAAAGAGTCTACT 115483 |||||||||| ||||| ||| Sbjct 195 ACATTCAAAAGGAGTCCACT 214 >seq281664 Length=792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||||||||| ||||| ||||| ||||| ||| | || ||||| Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || ||| || || ||||| ||||| || || Sbjct 716 GACACAATT-GACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCA 658 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||||| || | || || ||||| || || || | | ||| | || || || || Sbjct 657 ACAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAA 598 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| || || ||||||||| | ||| | || ||| Sbjct 597 CATCCAGAAGGAGTCTACTCTCCATCTTGTCTTG 564 >seq280556 Length=777 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCC 115342 ||||||||||||||| || || | || |||||||| || || | ||| ||| | | Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || | ||| ||| | || ||| || || ||||||||||| |||| || Sbjct 702 AG--ATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGAC 645 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||||| | |||| || || || ||||| ||||||| || || | ||||||||| Sbjct 644 CAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTAT 585 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || || | || ||||| || | | || ||||| Sbjct 584 AACATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGG 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423762336005440