Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq44495 113 4e-20 seq281664 98.7 9e-16 seq281289 98.7 9e-16 seq126021 93.3 4e-14 seq48980 93.3 4e-14 seq21568 93.3 4e-14 >seq44495 Length=1402 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | ||||||||||| || ||||| |||||| Sbjct 1148 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCA 1207 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||||| ||||| || ||| |||| | | |||||||| || || Sbjct 1208 AGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 1267 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | ||| || | Sbjct 1268 ATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACC 1327 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||||||||| || || || ||||||||||| ||||| Sbjct 1328 TCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | || |||||||| |||||||||||||| Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || ||| |||| | | |||||| ||||||||| Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| || || | | || | || || | | ||| | Sbjct 812 ATGCCTTCCTTGTC-CTGAATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTCTCCAC 870 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || ||||| |||||||| Sbjct 871 CTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| || || | ||| |||||||| || ||||| || || | Sbjct 920 CCACCCCTGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCC 979 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || || |||||||| || ||| |||| | | ||||||||| || ||| Sbjct 980 AAAGTCCTACCATCTTCCAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 1039 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | ||| | Sbjct 1040 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAACTCTCAACC 1099 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || |||||||||||||| Sbjct 1100 TCTAAGGTGATGGTCTTGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| |||||||||||||| Sbjct 94 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 153 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || |||||||| || || |||| || ||||||||||| ||||| Sbjct 154 AGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGA 213 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| |||||| ||| | | || | ||||| | ||| | Sbjct 214 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATTGTATCAGAACTCTCCACC 273 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 274 TCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 320 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | || | ||| |||||||| ||||||||||| || Sbjct 322 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCA 381 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || || |||| || | |||||||| || ||| Sbjct 382 AGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGG 441 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| || ||| | | || | ||||| | | ||||| Sbjct 442 ATGCCTTCCTTGTC-CTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGAC 500 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || | ||| || ||||| |||||||| Sbjct 501 CTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 >seq281289 Length=787 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || ||||| ||||| || || | ||| || || ||||| ||||| |||||| Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || || | || | | |||||||| |||||| Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| ||||| || ||||| ||| | | || | |||||| | || | Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACC 373 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 372 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq126021 Length=250 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | || |||||||||||||||||||||||| Sbjct 243 CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCT 184 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||||||||| |||| || | ||||| ||||| || Sbjct 183 AGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGA 124 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || |||| | || | || || | | || | Sbjct 123 ATACCTTCCTTGTC-TTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCAAC 65 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || ||||| |||||||| ||||| Sbjct 64 TTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq48980 Length=3483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||| | || || ||||| | |||||| || Sbjct 1020 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGCTTACCG 961 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTT 131156 ||| | || | ||||||||||||||| || ||||| || || || ||| | | || ||| Sbjct 960 GCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATC-CTGAATCTTTGCCTT 902 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | ||||| | ||||| |||| || | ||| || ||||| || || Sbjct 901 GACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGT 842 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| ||||| |||||||| Sbjct 841 TTTCACGAAGATCTGCAT 824 >seq21568 Length=652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| |||| || ||||| ||||| | || || |||||||| ||||||||||| ||| Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | || || || ||||||||||| |||| | | ||||||||| || || Sbjct 371 AGAGTTCTGCCA-TCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 429 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||| |||||||| ||| | | || ||| | | || | || |||| || | Sbjct 430 GATTCCCTCTTTGTCT-TGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTA 488 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || |||||||||||||| Sbjct 489 CTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470212590382080