Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq281664 107 2e-18 seq21568 102 7e-17 seq44495 84.2 2e-11 seq280556 82.4 6e-11 >seq281664 Length=792 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || || | ||| || || |||||||| || ||||||||||| || Sbjct 550 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCA 609 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||||||||| ||||| || || | || || | ||||||||| || Sbjct 610 AGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGG 669 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | |||||| | | | | ||||| | ||| Sbjct 670 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 729 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || |||||||||||||| ||||| Sbjct 730 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq21568 Length=652 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| |||||| || || |||||||| |||||||| || || Sbjct 310 CCCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGC 369 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| || | || |||| ||| ||||| ||| | || |||| ||| ||||| || Sbjct 370 TAGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 429 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||| | |||||| | | | | |||||| || Sbjct 430 GATTCCCTCTTTGTCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTAC 489 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || || |||| || || || |||||||||||| Sbjct 490 TTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCATT 538 >seq44495 Length=1402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || |||||||| || || Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || || || || | || |||| ||| || ||| ||| Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| ||||| | | | ||||| | |||| Sbjct 812 ATGCCTTCCTTGTCCTGAATTTTAGCT--TTCACATTATCGATCGTGTCAGAGCTCTCCA 869 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||||| || || || || |||||||| Sbjct 870 CCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 >seq280556 Length=777 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| ||||||||||| |||| || | ||||||||||| Sbjct 331 TGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGC 390 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || |||| || | || ||||| ||| | ||||| ||||| |||| Sbjct 391 TTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTA 450 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | ||| ||| | |||||||| ||||| || Sbjct 451 GCCTTCACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTT 510 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| Sbjct 511 AAGGTCTTCACAAATATTTGCAT 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403581659004880