Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq280556 114 9e-21
seq281289 109 4e-19
seq281664 104 2e-17
seq126021 104 2e-17
seq279770 84.2 1e-11
>seq280556
Length=777
Score = 114 bits (126), Expect = 9e-21
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
||||||||||| ||||| |||| ||| |||| | || || ||||| || || || ||
Sbjct 343 TCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCAGCGAAA 402
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| || | ||| || || | || | || || |||||| ||||| |||||||||
Sbjct 403 ATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTG 462
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || ||| ||| || |||||||||||||| || || || || || ||||| |||||
Sbjct 463 TCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTCTTCACA 522
Query 38307 AATATCTGCAT 38317
||||| |||||
Sbjct 523 AATATTTGCAT 533
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||| |||||| ||||| || ||||||||||| || ||||| | ||| | |
Sbjct 546 ACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCC 605
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || ||||| || || || || |||| | |||||| || | |||| ||||||||
Sbjct 606 ATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTT 665
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| || || || || || | | ||||||| ||| |||||||| || || ||
Sbjct 666 ATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGAT 725
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || ||||| ||||| || || |||||
Sbjct 726 TGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761
>seq281289
Length=787
Score = 109 bits (120), Expect = 4e-19
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||||||||| | || ||||| ||||||||||| |
Sbjct 784 CATT-CCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGT 726
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| | |||| || | || || | |||||| || || || ||||| | || || || |
Sbjct 725 CCGCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAG 666
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
||||| || ||||| || || || ||||||||| | || ||||| ||||
Sbjct 665 GGGGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTT 606
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || ||||| || || |||||||| || | |||||||||||| || |||||
Sbjct 605 CCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 554
>seq281664
Length=792
Score = 104 bits (114), Expect = 2e-17
Identities = 165/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| || || |||| ||| | || | ||||| || |||||| ||||| ||||| |
Sbjct 318 CATT-CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGT 376
Query 38146 CAGACAAAACACGTTCG-TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| ||| | | ||| || || | || ||||||||||| || | | ||| || ||
Sbjct 377 CAG-CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCT 435
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| ||||| |||||| |||||| ||||||| |||||| || | || ||||| ||
Sbjct 436 GGGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTC 495
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || | || || || || || ||||| || || ||||| ||||||||
Sbjct 496 TCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548
>seq126021
Length=250
Score = 104 bits (114), Expect = 2e-17
Identities = 163/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||| | ||||||||| |||||||||||| |||||||
Sbjct 247 CATT-CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAAT 189
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| | | ||| | || || | || || || ||||| || | | ||| ||||| |
Sbjct 188 CGGCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCG 129
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
||| | ||||| ||||| ||| || || ||||| | || || || ||||
Sbjct 128 GGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTT 69
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||| ||||||||| || ||||| | ||||| ||||| || |||||
Sbjct 68 CAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17
>seq279770
Length=767
Score = 84.2 bits (92), Expect = 1e-11
Identities = 152/220 (69%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGT 38163
||||||||| || || ||||| || ||||||||||| | ||| |||| |||
Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATC-GGCAA---GCGTTCGGCCGT 336
Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223
| || | ||| || || ||||| || || | ||||| |||| || | ||| ||||| |
Sbjct 335 CCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT 276
Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283
| ||| ||| ||| ||||| | | || ||| ||||| || || | || || |
Sbjct 275 CTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTG 216
Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
|||| || || | |||||| ||||| || ||||| | |||
Sbjct 215 TTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCTGTTA 176
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||||||| || || ||||| ||||||||||| || | | | || |||| ||
Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| || || || ||||| || || | |||||||| | |||| || || |||||
Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
||||| ||| ||||| | | ||||| |||||| || || | ||||| |||||
Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || | ||| ||||| ||||| |||||
Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333701681252072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |