Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq280556 114 9e-21 seq281289 109 4e-19 seq281664 104 2e-17 seq126021 104 2e-17 seq279770 84.2 1e-11 >seq280556 Length=777 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| ||||| |||| ||| |||| | || || ||||| || || || || Sbjct 343 TCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCAGCGAAA 402 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | ||| || || | || | || || |||||| ||||| ||||||||| Sbjct 403 ATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTG 462 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||| ||| || |||||||||||||| || || || || || ||||| ||||| Sbjct 463 TCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTCTTCACA 522 Query 38307 AATATCTGCAT 38317 ||||| ||||| Sbjct 523 AATATTTGCAT 533 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||||| ||||| || ||||||||||| || ||||| | ||| | | Sbjct 546 ACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCC 605 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || ||||| || || || || |||| | |||||| || | |||| |||||||| Sbjct 606 ATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTT 665 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || || || || || || | | ||||||| ||| |||||||| || || || Sbjct 666 ATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGAT 725 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || ||||| ||||| || || ||||| Sbjct 726 TGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761 >seq281289 Length=787 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||||||| | || ||||| ||||||||||| | Sbjct 784 CATT-CCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGT 726 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | |||| || | || || | |||||| || || || ||||| | || || || | Sbjct 725 CCGCCAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAG 666 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || ||||| || || || ||||||||| | || ||||| |||| Sbjct 665 GGGGGATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTT 606 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || || |||||||| || | |||||||||||| || ||||| Sbjct 605 CCACCTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 554 >seq281664 Length=792 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || |||| ||| | || | ||||| || |||||| ||||| ||||| | Sbjct 318 CATT-CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGT 376 Query 38146 CAGACAAAACACGTTCG-TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 ||| ||| | | ||| || || | || ||||||||||| || | | ||| || || Sbjct 377 CAG-CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCT 435 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | ||||| |||||| |||||| ||||||| |||||| || | || ||||| || Sbjct 436 GGGGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTC 495 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | || || || || || ||||| || || ||||| |||||||| Sbjct 496 TCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCAT 548 >seq126021 Length=250 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| | ||||||||| |||||||||||| ||||||| Sbjct 247 CATT-CCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAAT 189 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || || | || || || ||||| || | | ||| ||||| | Sbjct 188 CGGCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCG 129 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||||| ||||| ||| || || ||||| | || || || |||| Sbjct 128 GGGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTT 69 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||| ||||||||| || ||||| | ||||| ||||| || ||||| Sbjct 68 CAACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq279770 Length=767 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTT----CGT 38163 ||||||||| || || ||||| || ||||||||||| | ||| |||| ||| Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATC-GGCAA---GCGTTCGGCCGT 336 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| || || | ||||| |||| || | ||| ||||| | Sbjct 335 CCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT 276 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | ||| ||| ||| ||||| | | || ||| ||||| || || | || || | Sbjct 275 CTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTG 216 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 |||| || || | |||||| ||||| || ||||| | ||| Sbjct 215 TTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATCTGTTA 176 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| || || ||||| ||||||||||| || | | | || |||| || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || || | |||||||| | |||| || || ||||| Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | | ||||| |||||| || || | ||||| ||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| ||||| ||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333701681252072