Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq273947 196 6e-45 seq230622 96.9 4e-15 seq218924 95.1 2e-14 seq220814 93.3 5e-14 seq58762 84.2 3e-11 >seq273947 Length=700 Score = 196 bits (216), Expect = 6e-45 Identities = 413/606 (68%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| ||||| || || | |||||| || ||||| || || |||| ||||| || | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| ||||||||| ||||| | | || || | || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 |||||||| || |||||||| || ||| |||||| || | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 ||| || | || || | ||||| || ||| || || || || | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 32610 GATCTTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 | ||| | |||| ||||| || | | || | | ||| |||||| || || Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 |||||| || ||||||||||||| ||| || || || || || |||||||| ||||| Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTT 32787 || ||||| ||||| | ||| || ||||| ||| | | | || || ||||| ||||||| Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCAC 32843 | || ||||| || | || | ||| || ||| | | |||||| |||||| Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCAC 127 Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903 ||| |||||||| |||||||| || ||||| || | ||||| || ||| ||| | | Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68 Query 32904 TAG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 | | | || || || |||||| | ||| || || | | |||||| ||||| || || Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8 Query 32963 ATGAAT 32968 || || Sbjct 7 GTGGAT 2 >seq230622 Length=445 Score = 96.9 bits (106), Expect = 4e-15 Identities = 196/291 (67%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004 |||||| ||||| || || || || ||||||||||| ||||||||||| || ||| ||| Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064 || || | | || |||||| | || ||| | || | ||| || || || || Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 ||| || ||||| || || | || || | || || | || ||||| || |||| Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180 Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184 | ||||| | ||| | || | ||| ||||| || | ||||| || || || Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240 Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || ||||| || ||||| | ||| || | | | || ||||||||||| || Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291 >seq218924 Length=406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 216/319 (68%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| || ||||| || || || || || ||||| ||| || || || || | Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 |||| | ||| |||||||| ||||| ||||| | ||| || || || ||| | | || Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGA-GCAGAAACTACCT 208 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||||||||| || || || || || | || || | ||| | || ||| Sbjct 209 GAGAAGAAAATTCCCTCAACACAAGCGAACGCCA-AAATC-CGCTCAGCGAACGATTCTG 266 Query 32832 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||| |||||||| |||||||| ||||| || || || || || | || || | Sbjct 267 TACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAA 326 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 ||||| || | || || ||| | ||| || | ||| || |||| | ||||| Sbjct 327 TAGCACGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAAGAC 386 Query 32950 TATACATTTCCGAATGAAT 32968 | ||||| || || || || Sbjct 387 TGTACATCTCAGAGTGGAT 405 >seq220814 Length=412 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| |||||||| || | ||| || || |||||||| || || | ||||| || Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| ||| || || ||||| | | | || || | || | Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 || ||||||| ||||||||||| ||| |||||| || | ||||||||| | ||| Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43 >seq58762 Length=2755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||||| | ||| |||||||| ||||| ||||| || || | | | Sbjct 1438 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTGAACCAACGTTGTGACATTGTGTGA 1379 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | |||||| || || | ||| | ||| ||||| || || ||||| | |||||| Sbjct 1378 TAAGTTTTAATAGCAGAATCAACATCATCCTTG-TGAATACCAACAGCGACCCTCATTAA 1320 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || || || || | ||| | || ||||| | ||| || |||||| Sbjct 1319 CATGTGTTGCGGCCTCTCCACAACCTTCCCCTGAATCTTCAAGAGGTATGACCTTTCCAG 1260 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| | | || |||||| || || || || || Sbjct 1259 AGTTTTGAACCCAAAGAAATCATAATCAAAGTCACGGTCATATATGAT 1212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631215390915200