Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 196 6e-45
seq230622 96.9 4e-15
seq218924 95.1 2e-14
seq220814 93.3 5e-14
seq58762 84.2 3e-11
>seq273947
Length=700
Score = 196 bits (216), Expect = 6e-45
Identities = 413/606 (68%), Gaps = 14/606 (2%)
Strand=Plus/Minus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
||||| ||||| || || | |||||| || ||||| || || |||| ||||| || |
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
||||| |||| |||||||| ||||||||| ||||| | | || || | || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549
|||||||| || |||||||| || ||| |||||| || | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609
||| || | || || | ||||| || ||| || || || || | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 32610 GATCTTACT-GTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668
| ||| | |||| ||||| || | | || | | ||| |||||| || ||
Sbjct 360 TCATTCACTCGATTCT-CACTCAGTTTCTTCCTCAACAATGAATACAACAAACAAGCAAA 302
Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728
|||||| || ||||||||||||| ||| || || || || || |||||||| |||||
Sbjct 301 ATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCAT 242
Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTT 32787
|| ||||| ||||| | ||| || ||||| ||| | | | || || ||||| |||||||
Sbjct 241 TAATCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAGCTACCTGAGAAGAAGATTCCTT 183
Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCAC 32843
| || ||||| || | || | ||| || ||| | | |||||| ||||||
Sbjct 182 CAACACAAGCAAATGCCAAAATACGCTCGGCA-AACGATTCCGTGCTGTC---GATCCAC 127
Query 32844 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 32903
||| |||||||| |||||||| || ||||| || | ||||| || ||| ||| | |
Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68
Query 32904 TAG-tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962
| | | || || || |||||| | ||| || || | | |||||| ||||| || ||
Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8
Query 32963 ATGAAT 32968
|| ||
Sbjct 7 GTGGAT 2
>seq230622
Length=445
Score = 96.9 bits (106), Expect = 4e-15
Identities = 196/291 (67%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004
|||||| ||||| || || || || ||||||||||| ||||||||||| || ||| |||
Sbjct 1 AAGACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCT 60
Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 33064
|| || | | || |||||| | || ||| | || | ||| || || || ||
Sbjct 61 GGCTTCAGAGACTTGAACTTCTTTCATGAAACGTCCAGCAAGATTCTCCAAAACAATGCC 120
Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124
||| || ||||| || || | || || | || || | || ||||| || ||||
Sbjct 121 ATCAGATGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAA 180
Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184
| ||||| | ||| | || | ||| ||||| || | ||||| || || ||
Sbjct 181 GGACTCCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGC 240
Query 33185 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
|| ||||| || ||||| | ||| || | | | || ||||||||||| ||
Sbjct 241 TTCGGCCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACAT 291
>seq218924
Length=406
Score = 95.1 bits (104), Expect = 2e-14
Identities = 216/319 (68%), Gaps = 6/319 (2%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| |||||| || ||||| || || || || || ||||| ||| || || || || |
Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771
|||| | ||| |||||||| ||||| ||||| | ||| || || || ||| | | ||
Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGA-GCAGAAACTACCT 208
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831
|| ||||||||||| || || || || || | || || | ||| | || |||
Sbjct 209 GAGAAGAAAATTCCCTCAACACAAGCGAACGCCA-AAATC-CGCTCAGCGAACGATTCTG 266
Query 32832 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889
| ||| |||||||| |||||||| ||||| || || || || || | || || |
Sbjct 267 TACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAA 326
Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949
||||| || | || || ||| | ||| || | ||| || |||| | |||||
Sbjct 327 TAGCACGGAATAACCGATTCTTCTCAATCGAATCCTTGATATAGGTTTCAAGGAGAAGAC 386
Query 32950 TATACATTTCCGAATGAAT 32968
| ||||| || || || ||
Sbjct 387 TGTACATCTCAGAGTGGAT 405
>seq220814
Length=412
Score = 93.3 bits (102), Expect = 5e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
||||| |||||||| || | ||| || || |||||||| || || | ||||| ||
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
||||| |||| |||||||| ||| || || ||||| | | | || || | || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548
|| ||||||| ||||||||||| ||| |||||| || | ||||||||| | |||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCCAACAAG 43
>seq58762
Length=2755
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| | ||||| | ||| |||||||| ||||| ||||| || || | | |
Sbjct 1438 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTGAACCAACGTTGTGACATTGTGTGA 1379
Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | |||||| || || | ||| | ||| ||||| || || ||||| | ||||||
Sbjct 1378 TAAGTTTTAATAGCAGAATCAACATCATCCTTG-TGAATACCAACAGCGACCCTCATTAA 1320
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| || || || || || | ||| | || ||||| | ||| || ||||||
Sbjct 1319 CATGTGTTGCGGCCTCTCCACAACCTTCCCCTGAATCTTCAAGAGGTATGACCTTTCCAG 1260
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
|||||| || ||||| | | || |||||| || || || || ||
Sbjct 1259 AGTTTTGAACCCAAAGAAATCATAATCAAAGTCACGGTCATATATGAT 1212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631215390915200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |