Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq280556 127 2e-24
seq21568 127 2e-24
seq281289 118 9e-22
seq279770 116 3e-21
seq281664 96.9 3e-15
seq122851 96.9 3e-15
>seq280556
Length=777
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| || || || || |||||||| | ||||| ||| ||
Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| |||||| ||||| || || ||||| ||||||||
Sbjct 473 GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 414
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| | | ||||| || || || ||||| || |||| || || ||| || |||||
Sbjct 413 CAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGATGGACGTACATTGGCTGACTACAAC 354
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|||||||| |||||||| || ||
Sbjct 353 ATTCAAAAGGAATCCACCCTCCA 331
Score = 125 bits (138), Expect = 6e-24
Identities = 159/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| || || || ||| | ||||| | ||||| ||| ||
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 25058 TGACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| ||||| || | || | |||| || | || || ||||||||||| ||||| |||
Sbjct 702 AGATACTATTGA-TAACGTTAAAGCTAAGATCCAA-GATAAAGAAGGGATCCCACCAGAC 645
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | ||||| || || || ||||| ||||||| | ||| | | ||||||
Sbjct 644 CAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTAT 585
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| ||||| || || || || |||||
Sbjct 584 AACATTCAAAAGGAATCGACACTTCACTTGGTGCT 550
>seq21568
Length=652
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || ||||| ||||| || || ||||||| | ||||| || ||
Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| ||||| |||| | ||| |||||||| || || ||||||||||
Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAA-GACAAAGAGGGAATCCCACCTGACC 420
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || | || ||||| ||||| ||| | ||||||| | ||| | | |||||||
Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| ||||| || || ||||| |||||
Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGTGCT 326
Score = 98.7 bits (108), Expect = 9e-16
Identities = 100/128 (78%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 25075 TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133
||||| |||| | ||| ||||| || |||||||| || || |||||| | | || |||
Sbjct 239 TGAAGGCAAAGATTCAA-GACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTT 181
Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193
|| || |||||||| || |||| ||| ||| ||| |||||||||||||| ||||| |||
Sbjct 180 GCTGGAAAACAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCC 121
Query 25194 ACGCTACA 25201
|| || ||
Sbjct 120 ACCCTCCA 113
>seq281289
Length=787
Score = 118 bits (130), Expect = 9e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || || || | || |||||| ||||||| | || ||||| ||
Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| || ||||| ||||| || ||| || ||||| || || || ||||||||
Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | ||||| || || |||||| | ||||||| |||||| ||| || |||||
Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || ||||| || | ||||| |||||
Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTGCT 765
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || ||| | ||||| ||| | || || | || ||||| |||
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || ||||| | |||| ||| || ||||| || || || || |||||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAG-GATAAAGAGGGAATCCCTCCAGACCA 444
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || |||||||||| || || || | || |||| ||| || | | |||||| ||
Sbjct 445 GCAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAA 504
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||||||||| || || || || |||||
Sbjct 505 CATACAAAAAGAATCAACCCTTCACTTGGTGCT 537
>seq279770
Length=767
Score = 116 bits (128), Expect = 3e-21
Identities = 164/226 (73%), Gaps = 7/226 (3%)
Strand=Plus/Plus
Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053
|||| |||||||| || ||||| || | || || ||| | ||||| |||| |||||
Sbjct 177 AACAGATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAA 236
Query 25054 CGTCTGACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
|| ||||| || || || || | ||||| | ||| || ||||| || |||||||
Sbjct 237 GCTCAGACACAATTGA--CAATGTAAAGGCAAAGATTCAA-GATAAAGAGGGCATTCCAC 293
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| ||||||||| || |||| ||||| || || ||| | || || | || || | | ||
Sbjct 294 CCGACCAACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCG 353
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||||| || || ||||| || || ||||| ||||| || ||
Sbjct 354 ATTACAATATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACT 399
Score = 111 bits (122), Expect = 1e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| | || || ||| |||| || | || ||||| |||
Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || || || ||| |||||| ||||| || || || |||||||| |
Sbjct 470 GATACAATTGA--CAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATC 527
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||| | | |||||||| || || || | || || | ||| ||| | | ||| ||||
Sbjct 528 AACAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACA 587
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||| || ||||| || || ||||| || ||
Sbjct 588 ATATTCAGAAGGAATCTACCCTGCATTTGGTTCT 621
>seq281664
Length=792
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || ||||||| |||| || ||| |||
Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| |||| ||||||| ||| ||||| ||||| || || || |||||
Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCA-GGACAAGGAAGGCATCCCCCCAGACCA 430
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | || |||||||| || || | || |||| | ||| | | || |||||
Sbjct 429 GCAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 370
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||| || || || || || || | || || | || || |||||||
Sbjct 369 CATTCAGAAGGAGTCAACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGAA 320
>seq122851
Length=247
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167
|||||||||||||| || | |||||||| || || ||| | ||||| | | | ||| |||
Sbjct 1 CACCTGACCAACAGAGGTTGATTTTTGCTGGTAAGCAACTTGAAGACGGTAGGACTCTGG 60
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||||||||| ||||| ||| | ||||| |||||
Sbjct 61 CAGATTACAATATTCAAAAGGAATCGACGTTGCATTTGGTGCT 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431716647082280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |