Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq280556 127 2e-24 seq21568 127 2e-24 seq281289 118 9e-22 seq279770 116 3e-21 seq281664 96.9 3e-15 seq122851 96.9 3e-15 >seq280556 Length=777 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| || || || || |||||||| | ||||| ||| || Sbjct 533 ATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTCA 474 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| |||||| ||||| || || ||||| |||||||| Sbjct 473 GACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 414 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || || ||||| || |||| || || ||| || ||||| Sbjct 413 CAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGATGGACGTACATTGGCTGACTACAAC 354 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||||||| |||||||| || || Sbjct 353 ATTCAAAAGGAATCCACCCTCCA 331 Score = 125 bits (138), Expect = 6e-24 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || || ||| | ||||| | ||||| ||| || Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703 Query 25058 TGACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || | |||| || | || || ||||||||||| ||||| ||| Sbjct 702 AGATACTATTGA-TAACGTTAAAGCTAAGATCCAA-GATAAAGAAGGGATCCCACCAGAC 645 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || || || ||||| ||||||| | ||| | | |||||| Sbjct 644 CAACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTAT 585 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| ||||| || || || || ||||| Sbjct 584 AACATTCAAAAGGAATCGACACTTCACTTGGTGCT 550 >seq21568 Length=652 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||| || || ||||||| | ||||| || || Sbjct 538 AATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTC 479 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| ||||| |||| | ||| |||||||| || || |||||||||| Sbjct 478 CGACACCATCGACAATGTGAAGACAAAGATTCAA-GACAAAGAGGGAATCCCACCTGACC 420 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| ||||| ||| | ||||||| | ||| | | ||||||| Sbjct 419 AGCAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACA 360 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || || ||||| ||||| Sbjct 359 ACATCCAAAAGGAATCAACTCTGCATTTGGTGCT 326 Score = 98.7 bits (108), Expect = 9e-16 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25075 TGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 ||||| |||| | ||| ||||| || |||||||| || || |||||| | | || ||| Sbjct 239 TGAAGGCAAAGATTCAA-GACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTT 181 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 || || |||||||| || |||| ||| ||| ||| |||||||||||||| ||||| ||| Sbjct 180 GCTGGAAAACAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCC 121 Query 25194 ACGCTACA 25201 || || || Sbjct 120 ACCCTCCA 113 >seq281289 Length=787 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || | || |||||| ||||||| | || ||||| || Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || ||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || |||||| | ||||||| |||||| ||| || ||||| Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||| || | ||||| ||||| Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTGCT 765 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | ||||| ||| | || || | || ||||| ||| Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || ||||| | |||| ||| || ||||| || || || || ||||| Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAG-GATAAAGAGGGAATCCCTCCAGACCA 444 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||||||||| || || || | || |||| ||| || | | |||||| || Sbjct 445 GCAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAA 504 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||| || || || || ||||| Sbjct 505 CATACAAAAAGAATCAACCCTTCACTTGGTGCT 537 >seq279770 Length=767 Score = 116 bits (128), Expect = 3e-21 Identities = 164/226 (73%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| |||||||| || ||||| || | || || ||| | ||||| |||| ||||| Sbjct 177 AACAGATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAA 236 Query 25054 CGTCTGACACTATCGAGTCACTGAA---GCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| || || || || | ||||| | ||| || ||||| || ||||||| Sbjct 237 GCTCAGACACAATTGA--CAATGTAAAGGCAAAGATTCAA-GATAAAGAGGGCATTCCAC 293 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||||||| || |||| ||||| || || ||| | || || | || || | | || Sbjct 294 CCGACCAACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCG 353 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||||| || || ||||| || || ||||| ||||| || || Sbjct 354 ATTACAATATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACT 399 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| |||| || | || ||||| ||| Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| |||||| ||||| || || || |||||||| | Sbjct 470 GATACAATTGA--CAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATC 527 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | |||||||| || || || | || || | ||| ||| | | ||| |||| Sbjct 528 AACAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACA 587 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || ||||| || || ||||| || || Sbjct 588 ATATTCAGAAGGAATCTACCCTGCATTTGGTTCT 621 >seq281664 Length=792 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| |||| || ||| ||| Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| |||| ||||||| ||| ||||| ||||| || || || ||||| Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCA-GGACAAGGAAGGCATCCCCCCAGACCA 430 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || |||||||| || || | || |||| | ||| | | || ||||| Sbjct 429 GCAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAA 370 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || || | || || | || || ||||||| Sbjct 369 CATTCAGAAGGAGTCAACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGAA 320 >seq122851 Length=247 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||||||||||||| || | |||||||| || || ||| | ||||| | | | ||| ||| Sbjct 1 CACCTGACCAACAGAGGTTGATTTTTGCTGGTAAGCAACTTGAAGACGGTAGGACTCTGG 60 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||||||||| ||||| ||| | ||||| ||||| Sbjct 61 CAGATTACAATATTCAAAAGGAATCGACGTTGCATTTGGTGCT 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431716647082280