Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq273947 196 5e-45 seq299969 134 2e-26 seq230622 123 3e-23 seq218924 96.9 4e-15 >seq273947 Length=700 Score = 196 bits (216), Expect = 5e-45 Identities = 415/607 (68%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| |||||||||||| |||||||||||||||| ||||| |||| ||| || ||| | Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC---ACCGATCAACTCGTAC 92917 | || | | | |||||| | | ||||| | ||| | ||| | ||| || Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAG-ATTTTGCCATACCCTAAAGCTCCAAC 482 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 | ||||||| || |||||||| ||||| || ||||||||| | ||||||||| | Sbjct 481 CA--ATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACT 424 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 ||| ||||| | || || || ||| || |||| || | |||||||| | | Sbjct 423 AGAGCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACA 364 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG-TACATTAAGCACGC 93096 || || | |||| | | | |||| | | | | ||| |||| || || || Sbjct 363 ATCTCATTCACTCGATTCTCACTCAGTTTCT-TCCTCAACAATGAATACAACAAACAAGC 305 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||| ||| ||| | ||| ||||||||||| ||||||||||| |||||| | || || Sbjct 304 AAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGG 245 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATAC 93215 | | ||| ||||| || | ||| || | || |||| || ||||| || || || || | Sbjct 244 CATTAATCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAGCTACCTGAGAAGAAGATTC 186 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| || |||||||||| |||||| |||||||| | | | | ||| ||||| Sbjct 185 CTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGATTCCG---TGCTGTCGATCC 129 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT- 93334 | ||||| |||||||| || || ||||| | ||| || | || ||||| || |||| Sbjct 128 ACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA 69 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 | | ||| ||||| |||||| || || || |||| | ||| ||||| ||| Sbjct 68 ATCGACTCT-TCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCA 10 Query 93395 GAATGGA 93401 || |||| Sbjct 9 GAGTGGA 3 >seq299969 Length=1347 Score = 134 bits (148), Expect = 2e-26 Identities = 213/303 (70%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||| ||||| |||| |||||| || |||||||||||||| ||||| ||| ||||| Sbjct 8 TACATCTCAGAGTGGATATTCTCGATCGCAATTTGGAATCCATAGAAGGCTCTGGCTTCA 67 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | | || ||||||| || | | ||||||| || || || ||||| || Sbjct 68 GCCACTTGAACTTCTTTCATGAAGCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAA 127 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTATC 93564 || || || || || | | || | || || |||||||| || ||||| | || Sbjct 128 GCAGCGAAGAAGGCAAGAACGTGAGTGATGAAGTGTTTCTCGTCGGAAGTTAAGGAT-TC 186 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||||| | || || | ||| ||||||||||| ||| ||||||| || || ||||| || Sbjct 187 CCAATGGCGAAGGTCCTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGC 246 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGG 93684 ||| |||||||| ||||| || | |||| ||||| || || ||| || |||| || Sbjct 247 TTTCTTGTACATCTCCCAGATTTGAGGATACTGAATCGGGAACATGCAGAAGCGATCGGG 306 Query 93685 GTT 93687 ||| Sbjct 307 GTT 309 >seq230622 Length=445 Score = 123 bits (136), Expect = 3e-23 Identities = 213/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||| ||||| |||| ||| || || || ||||| ||||| || || ||| ||||| Sbjct 8 TACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGCTTCA 67 Query 93446 GTGATCTGCACTTCTTG-AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | || || ||||||| | ||| || | | ||||| || || || ||||| || Sbjct 68 GAGACTTGAACTTCTTTCATGAAACGTC-CAGCAAGATTCTCCAAAACAATGCCATCAGA 126 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT-TTAAGCTTAT 93563 ||| ||||| || || | | || | || || || ||||| || ||||| | Sbjct 127 TGCAGCAAAGAAGGCAAGCACGTGAGTGATGAAGTGCTTCTCGTCGGGAGTTAAGGAC-T 185 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||||| | ||||| | ||| ||||||||||| ||| | ||||| || || ||||| | Sbjct 186 CCCAATGGCGAAGATCCTGTGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAAGCTTCGG 245 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAG 93683 | || |||||||| ||||| || | | || ||||||||||| ||| || |||| || Sbjct 246 CCTTCTTGTACATCTCCCAAATTTGAGGGTACTGAATTGGAAACATGCAGAAGCGATCAG 305 Query 93684 GGTT 93687 |||| Sbjct 306 GGTT 309 >seq218924 Length=406 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/246 (70%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || || ||||| || ||| | ||||| |||| ||| ||||||||||| | Sbjct 89 TACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAG 148 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || ||||| || || | || || ||||| || | ||| || || | |||| |||||||| Sbjct 149 AACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCAGAAACTACC 207 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || || || || || |||| ||| || || || || | | | Sbjct 208 TGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAACGATTCTG- 266 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 ||||| ||||| || || |||||||| || |||||||| | || || | ||||| Sbjct 267 --TACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTC 324 Query 93322 GATAGC 93327 ||||| Sbjct 325 AATAGC 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554736988594880