Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq281289 104 2e-17
seq280556 100 2e-16
seq279770 98.7 8e-16
seq126021 86.0 5e-12
>seq281289
Length=787
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| ||||| ||||| | ||||||||||| || ||| | || ||||
Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | | || || |||||| || ||||| || | || || ||
Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||||||||||||| ||| || || || | || ||| | ||| | |||||||||||
Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|||||||||||||| || || || || ||| | ||| | || |||||
Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGG 552
>seq280556
Length=777
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
||||||||||||||| || || | || || ||||| || || ||||| ||
Sbjct 762 AATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTC 703
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111304
||| || ||| | || ||| || || || |||||||| | |||| | || |
Sbjct 702 AGATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGG-GATCCCACCAGACC 644
Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364
|||||||| | |||| || || || |||||||||||| | ||| | ||||||||||
Sbjct 643 AACAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATA 584
Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
| || ||||| ||||| ||||| || || ||| ||||||| || || ||
Sbjct 583 ACATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGG 535
>seq279770
Length=767
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| || || ||||| | || |||||||| || ||| | || |||| |
Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
|| | ||| | | ||||| ||| ||| || ||||| ||| |||| ||| |||
Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| |||||||| | ||| || || ||| | || || ||| | |||||||| |||
Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || || ||||||||||| ||||| ||| | | || ||||||||
Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 408
>seq126021
Length=250
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245
|||||||||||| ||||||||| | || || || || ||||| | ||| ||| |
Sbjct 16 AATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTC 75
Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305
|| | | | | | || ||| || ||| ||||| ||||| ||||| |||||
Sbjct 76 TGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCA 135
Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363
|||||| | || | ||| ||||| || | |||||| || | |||| ||||||||
Sbjct 136 GCAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTA--GCCGATTAC 193
Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || ||||| || || || || || | ||| | ||||| || |||||
Sbjct 194 AACATTCAAAAGGAGTCCACTCTTCACCTTGTGCTCCGTCTTCGTGGTGG 243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421466903550400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |