Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq281289 138 9e-28 seq279770 138 9e-28 seq126021 125 6e-24 seq44495 114 1e-20 seq21568 113 4e-20 seq280556 111 1e-19 seq281664 91.5 1e-13 seq122851 86.0 5e-12 seq290322 82.4 6e-11 >seq281289 Length=787 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| |||||| | ||||| ||||| | || ||||| ||||||| Sbjct 324 AGATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTT 383 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | ||| || | || |||||||| || || ||||| || || || || | Sbjct 384 CTGATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACC 443 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | ||||| ||||| || || ||| | |||||| || ||| || ||||||| | Sbjct 444 AGCAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATA 503 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| ||||||||||| ||| | || || || | || || || || || Sbjct 504 ACATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGG 552 >seq279770 Length=767 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || || ||||| | |||||||| ||||||| | Sbjct 409 GATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTC 468 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | ||| || |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 469 TGATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTGATCA 528 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || ||| | ||||| || || || |||| ||||| Sbjct 529 ACAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTACAA 588 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | ||||| ||| | || | || || ||| Sbjct 589 TATTCAGAAGGAATCTACCCTGCATTTGGTTCTTCGTCTTCGTGGGGGT 637 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || ||||| | || || ||||| |||| || || ||||||| | Sbjct 180 AGATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCT 239 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | ||| || | || ||| |||||||| || ||||| ||||||||||| | Sbjct 240 CAGACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACC 299 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| | ||||| ||||| || || || | ||||| ||| || | ||||||||| Sbjct 300 AACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACA 359 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || || ||||| || | ||||| || | || | ||||| || Sbjct 360 ATATCCAGAAGGAATCTACACTCCATTTGGTGCTTAGACTTCGCGGTGG 408 >seq126021 Length=250 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || || || | || || ||||| |||| | | Sbjct 17 ATGCAAATTTTCGTCAAAACGCTCACGGGGAAGACTATTACACTAGAAGTTGAAAGCTCT 76 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || |||||||||||||| |||||||| || ||||| Sbjct 77 GACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAG 136 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| ||| | || ||| || || | ||||||||||| Sbjct 137 CAAAGGTTGATCTTTGCAGGCAAGCAGCTCGAAGATGGTCGTACACTAGCCGATTACAAC 196 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || ||||| Sbjct 197 ATTCAAAAGGAGTCCAC 213 >seq44495 Length=1402 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || |||||||| |||| || || || ||| || | Sbjct 1374 ATGCAAATTTTCGTAAAGACCCTGACAGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1315 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || || ||||||||||||||||| || || || Sbjct 1314 GATACCATCGATAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1255 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || ||||| || || |||||||| || ||| | ||||||| ||| Sbjct 1254 CAAAGACTTATCTTCGCCGGGAAGCAACTAGAGGATGGTCGTACCCTTGCCGATTATAAC 1195 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | || ||||| | || || ||| Sbjct 1194 ATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGT 1147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || ||||| || || |||| || || ||||| | | | Sbjct 919 GATGCAGATCTTCGTGAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTC 860 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | ||| |||||||| |||||||| || || || || ||||| Sbjct 859 TGACACGATCGATAATGTGAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGATCA 800 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || || || ||| | |||||| | || || | |||||||| Sbjct 799 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTTGAGGATGGAAGGACTCTCGCTGATTACAA 740 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||| || || ||||| | || | || |||| | || || |||||| Sbjct 739 CATTCAGAAGGAGTCCACTCTTCACCTCGTCCTGCGTCTCCGTGGTGGTTTT 688 >seq21568 Length=652 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || ||||| | ||||| |||| || Sbjct 537 ATGCAGATTTTCGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTAGAAAGTTCC 478 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || ||| ||||||||||| ||||| || ||||| || || Sbjct 477 GACACCATCGACAATGTGAAGACAAAGATTCAAGACAAAGAGGGAATCCCACCTGACCAG 418 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| || | || ||| | | || | | ||||||||| Sbjct 417 CAGAGGCTGATCTTTGCAGGCAAGCAACTGGAAGATGGCAGAACTCTAGCAGATTACAAC 358 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| || | ||||| || | ||| |||| || || Sbjct 357 ATCCAAAAGGAATCAACTCTGCATTTGGTGCTTCGACTGCGTGGTGG 311 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 ||| ||||||||||||||||| ||||| || |||||||| | | || ||||| || || Sbjct 232 AAAGATTCAAGACAAGGAGGGGATTCCTCCAGATCAACAGAGATTGATCTTTGCTGGAAA 173 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACA 22421 ||| || |||||| || || | | |||||||| ||||| ||||| |||||| | || Sbjct 172 ACAATTGGAGGATGGTCGGACTTTGGCTGATTACAATATTCAGAAAGAGTCCACCCTCCA 113 Query 22422 TTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 | || | || ||||||| || ||| Sbjct 112 CCTTGTCCTCCGCCTGCGCGGTGGCTTT 85 >seq280556 Length=777 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || ||||| || || || |||| | ||||| || | | | Sbjct 534 GATGCAAATATTTGTGAAGACCTTAACAGGAAAGACCATCACATTAGAAGTTGAGAGCTC 475 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| || | || ||||| || ||||||||||||||||| || || || Sbjct 474 AGACACTATCGACAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATTCCTCCTGACCA 415 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || || || || || || |||||| || || | | || ||||| Sbjct 414 GCAAAGACTGATTTTCGCTGGGAAGCAATTGGAGGATGGACGTACATTGGCTGACTACAA 355 Query 22398 CATTCAAAAAGAATCCACC 22416 ||||||||| ||||||||| Sbjct 354 CATTCAAAAGGAATCCACC 336 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || ||||| || ||||| ||||| | ||||| || | | Sbjct 761 ATGCAAATTTTTGTGAAGACCTTAACAGGAAAAACAATCACTTTGGAAGTTGAGAGTTCA 702 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| || || ||||| || || || || ||||| || ||| Sbjct 701 GATACTATTGATAACGTTAAAGCTAAGATCCAAGATAAAGAAGGGATCCCACCAGACCAA 642 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || ||| | | || | ||||||| ||| Sbjct 641 CAAAGGTTAATTTTCGCTGGGAAGCAATTGGAAGATGGCAGGACTTTAGCCGATTATAAC 582 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| || | || || || |||| | || ||||| Sbjct 581 ATTCAAAAGGAATCGACACTTCACTTGGTGCTGCGTCTTCGTGGAGG 535 >seq281664 Length=792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||||| || || || || |||| || || || || | | | Sbjct 548 ATGCAGATCTTCGTTAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 489 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || ||||||||| |||||||| || || || || || || Sbjct 488 GATACCATCGACAACGTGAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 429 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || ||| | |||||| | || | | || |||||| Sbjct 428 CAAAGATTGATCTTTGCCGGAAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAAC 369 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 368 ATTCAGAAGGAGTCAACC 351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||| || || |||| | || || || | | Sbjct 776 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 717 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| |||||||| ||||| || || || ||| Sbjct 716 GACACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCAGACCAA 657 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || |||||||| ||||| ||| || | | || |||||| Sbjct 656 CAGAGACTCATCTTCGCTGGAAAACAGTTGGAGGACGGCCGAACTCTTGCAGACTACAAC 597 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | || ||||| | || || ||| Sbjct 596 ATCCAGAAGGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGGT 549 >seq122851 Length=247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || ||||| || || ||| |||| | ||||| |||| | Sbjct 120 ATGCAGATTTTTGTGAAGACCTTAACAGGGAAGACGATCACATTGGAAGTCGAAAGTTCA 179 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | ||| || |||||||| ||||||||||| ||||| || ||| Sbjct 180 GACACCATTGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCACCTGACCAA 239 Query 22339 CA 22340 || Sbjct 240 CA 241 >seq290322 Length=950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| ||||| || ||||| ||||| |||||||| || ||| | |||||| ||| Sbjct 128 GGTATTCCCCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGC 187 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || || ||||||||||||| || |||| Sbjct 188 ACTCTCGCCGATTACAACATCCAGAAAG 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418167219396280