Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq279770 116 3e-21 seq281289 96.9 2e-15 seq281664 86.0 4e-12 >seq279770 Length=767 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| | || |||||||| || ||| | || |||| | || Sbjct 182 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 241 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| ||||||||||| | || ||||| Sbjct 242 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 301 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || ||||| || || ||| | |||||||||||| Sbjct 302 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGACGGCCGAACGCTTGCCGATTACAAT 361 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| || ||| |||| Sbjct 362 ATCCAGAAGGAATCTACACTCCATTTGGT 390 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || |||||||||||||| | || |||| | Sbjct 410 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 469 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||||| || || |||||| | ||||| | Sbjct 470 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCACCTG---AT 526 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| || |||||||| || || || || || |||| | ||||| ||| Sbjct 527 CAACAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTCGCCGACTAC 586 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||||| || ||| |||| | ||| | || || || Sbjct 587 AATATTCAGAAGGAATCTACCCTGCATTTGGTTCTTCGTCTTCGTGGGGG 636 >seq281289 Length=787 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || |||||||| || ||| | || |||| | Sbjct 326 ATGCAAATCTTTGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTGGAAAGTTCT 385 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||||||||| | ||| | |||| Sbjct 386 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAAGAGGGAATCCCTCCAGACCAG 445 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||| |||||||| || || || || ||| ||| | |||||||| || Sbjct 446 CAAAGGCTTATTTTTGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 505 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || || ||||| || ||||| |||| | |||||||| || ||| Sbjct 506 ATACAAAAAGAATCAACCCTTCACTTGGTGCTCCGTTTACGTGGTGGA 553 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || |||||||| ||| | || |||| | | Sbjct 553 AATGCAAATCTTCGTGAAAACCCTCACTGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 612 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || ||||||||||| | || |||| Sbjct 613 TGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGAATCCCCCCTGACCA 672 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| || || ||||| |||||||| |||||| ||| |||| || ||||| Sbjct 673 GCAGAGACTAATTTTCGCTGGTAAACAACTTGAAGATGGCCGCACTTTGGCGGACTACAA 732 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||| || | ||| |||| | ||| | || || ||| Sbjct 733 TATTCAGAAGGAATCAACATTGCATTTGGTGCTCCGTCTTCGTGGTGGA 781 >seq281664 Length=792 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || || ||||| ||| |||| ||| | Sbjct 321 AATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGTTC 262 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| |||||| || || || || | ||| | |||| Sbjct 261 TGATACAATCGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATTCCTCCAGACCA 202 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||| || || || |||||| || || | || |||||||| Sbjct 201 GCAGCGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGAAGGACCCTTGCTGATTACAA 142 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| ||||| ||||| | || | ||| | || || |||| |||| Sbjct 141 CATTCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGATTTTAA 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356793094129648