Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq44495 118 2e-21 seq48980 109 1e-18 seq281664 105 2e-17 seq280556 102 2e-16 seq281289 100 7e-16 seq279770 98.7 2e-15 seq124980 89.7 1e-12 >seq44495 Length=1402 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| |||| ||| || || || || || || || ||| Sbjct 692 CCACCACGGAGACGCAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCG 751 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | || || || ||||||||||| | ||| ||| ||| Sbjct 752 AGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGAGGG 811 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| ||||| |||||||| || || || | || |||| || Sbjct 812 ATGCCTTCCTTGTCCTGAATTTTAGCTTTCACATTATCGATCGTGTCAGAGCTC---TCC 868 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 869 ACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAGATCTGCAT 918 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || | || | || ||||| | || ||||| |||||| Sbjct 956 TCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTCCAGCTGCTTTCCAGCGAAG 1015 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || ||||||||| || || || ||||| || || || ||||| Sbjct 1016 ATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTG 1075 Query 288403 TCTATAGAATCGCTCGA---TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || || | ||||| ||||| ||||||| |||||| Sbjct 1076 TCAATGGTGTC---CGAACTCTCAACCTCTAAGGTGATGGTCTTGCCGGTCAACGTCTTG 1132 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 1133 ACGAAAATCTGCAT 1146 >seq48980 Length=3483 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || | || ||||| | |||| || || ||||| || |||||||| Sbjct 1050 CCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCA 991 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| || |||||||| || || Sbjct 990 AGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGT 931 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 ||||| || |||||||| || || || || || || || || | ||| ||| || Sbjct 930 ATTCCCTCCTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTC---TCG 874 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||||||||| || || || ||||| |||||||| Sbjct 873 ACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824 >seq281664 Length=792 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || || |||| || || || || || || || || || Sbjct 93 TCCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 152 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| | || ||||| || ||||||| ||||| || ||||| Sbjct 153 AAGGGTCCTTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCGCTGCTGG---TCTGG 209 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 |||||||| || ||||||||||| || || || || || || | ||| ||| Sbjct 210 AGGAATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTGTCGATTGTATCAGAACTC-- 267 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | ||||| |||||||| ||||| |||||||| || ||||||||| Sbjct 268 -TCCACCTCCAAGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCATT 321 >seq280556 Length=777 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| ||| ||||| || || ||||| || Sbjct 307 CCACCACGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCC 366 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| || || ||||| || || ||||| ||||| | |||| | || | Sbjct 367 AATGTACGTCCATCCTCCAATTGCTTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGA--- 423 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || || ||||||||||| || ||||| || || |||| || |||| Sbjct 424 GGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCGATAGTGTCTGAGCTC--- 480 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| ||||| || || | ||||| || ||||| ||||| Sbjct 481 TCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTCTTCACAAATATTTGCAT 533 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || ||||| ||||| | || | || ||||| ||||| || || ||||| Sbjct 570 TTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAA 629 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| |||||| ||||||||||| ||||| || ||||| ||||| Sbjct 630 AATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTT 689 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || || | ||| ||||| | ||||| || || || || | ||||| Sbjct 690 ATCAATAGTAT--CTGAACTCTCAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTC 747 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 748 ACAAAAATTTGCATT 762 >seq281289 Length=787 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| |||||||| || || || || || | || ||||| || || Sbjct 517 TTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAA 458 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | || || ||||| |||||| ||||||||||| ||||| || ||||| Sbjct 457 AATAAGCCTTTGCTGG---TCTGGAGGGATTCCCTCTTTATCCTGAATTTTGGCCTTCAC 401 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| ||| ||| || || || || || || || ||||| ||||| || Sbjct 400 ATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTT 341 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 340 CACAAAGATTTGCAT 326 >seq279770 Length=767 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||||||||| || || ||||| || | || || || || || Sbjct 601 TTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCAAGCTGCTTACCAGCAAA 542 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||||| | |||||| || || || || |||||||| || || || || Sbjct 541 AATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGGATTTTAGCCTTGACATT 482 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||| || || || || || || || || || || ||||| || Sbjct 481 GTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTGCCAGTAAGGGTCTTCAC 422 Query 288462 GAATATCTGCAT 288473 ||||| ||||| Sbjct 421 AAATATTTGCAT 410 >seq124980 Length=249 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/166 (73%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || ||||| |||| || |||||| ||||| || |||| Sbjct 163 CATG-CCACCCCGAAGCCGTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGT 105 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || || || | ||| || || || ||||||| || || ||| | Sbjct 104 CGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAATCGTTGCTGA---T 48 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 | ||| |||||||| ||||||||||| || || || ||||| || Sbjct 47 CCGGGGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175042838985936