Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 134 2e-26
seq218924 113 5e-20
seq42289 87.8 2e-12
>seq273947
Length=700
Score = 134 bits (148), Expect = 2e-26
Identities = 186/260 (72%), Gaps = 3/260 (1%)
Strand=Plus/Minus
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|| ||||||||||| || || || | ||||| ||||| ||||| ||||| | ||
Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
|| || |||||||||||||| | || || ||| |||||||||||||| || |||||
Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175
Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238
|| || || || | |||||| ||||| || || | |||| | |||||| | ||||
Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAACGATTCCG---TGCTGTCGATCCACTTTAACGCC 118
Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 126298
|| | ||||| |||| || ||| ||||| |||| ||| || ||| | | ||||
Sbjct 117 CAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATCGACTCTTC 58
Query 126299 TCTGATGGATCTTTGATGTA 126318
|| || ||||||||| ||
Sbjct 57 TCGTTTGAATCTTTGATATA 38
>seq218924
Length=406
Score = 113 bits (124), Expect = 5e-20
Identities = 138/188 (73%), Gaps = 9/188 (5%)
Strand=Plus/Plus
Query 126086 TCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 126145
||||| ||||| | ||| ||||| || || || || || ||||||||||| | ||
Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199
Query 126146 AATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205
|| ||| |||||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 200 AAACTACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAA- 258
Query 126206 GAGCGCGACTTTG---TGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACAC 126262
||| | || |||||| |||||||| |||||| | |||||||||| || ||
Sbjct 259 -----CGATTCTGTACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAG 313
Query 126263 GGGACGGT 126270
||||| ||
Sbjct 314 GGGACAGT 321
>seq42289
Length=1066
Score = 87.8 bits (96), Expect = 2e-12
Identities = 187/277 (68%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935
||| ||||||||||||||||| || |||||||| ||||| || | |||||||| |
Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980
Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995
| ||| || | | || | || ||||| ||||| ||||| ||||| || || ||
Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920
Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054
|| | ||| || ||| ||||| | || || ||||| ||||| ||||| |
Sbjct 919 AGG-AGCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861
Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114
|||||| ||| ||||| | | || | ||| || ||| || || | ||| || |
Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801
Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
| | ||| ||||| || || || || || || || ||
Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGG 764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595075353104960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |