Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq273947 134 2e-26 seq218924 113 5e-20 seq42289 87.8 2e-12 >seq273947 Length=700 Score = 134 bits (148), Expect = 2e-26 Identities = 186/260 (72%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || ||||||||||| || || || | ||||| ||||| ||||| ||||| | || Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 || || |||||||||||||| | || || ||| |||||||||||||| || ||||| Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 || || || || | |||||| ||||| || || | |||| | |||||| | |||| Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAACGATTCCG---TGCTGTCGATCCACTTTAACGCC 118 Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 126298 || | ||||| |||| || ||| ||||| |||| ||| || ||| | | |||| Sbjct 117 CAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAATCGACTCTTC 58 Query 126299 TCTGATGGATCTTTGATGTA 126318 || || ||||||||| || Sbjct 57 TCGTTTGAATCTTTGATATA 38 >seq218924 Length=406 Score = 113 bits (124), Expect = 5e-20 Identities = 138/188 (73%), Gaps = 9/188 (5%) Strand=Plus/Plus Query 126086 TCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 126145 ||||| ||||| | ||| ||||| || || || || || ||||||||||| | || Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199 Query 126146 AATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || ||| |||||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 200 AAACTACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAA- 258 Query 126206 GAGCGCGACTTTG---TGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACAC 126262 ||| | || |||||| |||||||| |||||| | |||||||||| || || Sbjct 259 -----CGATTCTGTACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAG 313 Query 126263 GGGACGGT 126270 ||||| || Sbjct 314 GGGACAGT 321 >seq42289 Length=1066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || |||||||| ||||| || | |||||||| | Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | || | || ||||| ||||| ||||| ||||| || || || Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || | ||| || ||| ||||| | || || ||||| ||||| ||||| | Sbjct 919 AGG-AGCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| ||| ||||| | | || | ||| || ||| || || | ||| || | Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | ||| ||||| || || || || || || || || Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGG 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595075353104960