Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq279770 111 2e-19 seq44495 104 3e-17 seq281289 100 3e-16 seq280556 89.7 6e-13 seq122851 89.7 6e-13 seq21568 82.4 8e-11 >seq279770 Length=767 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || ||||| ||||||||||| || || ||||| || |||| || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || |||| ||| || || | ||| | | ||||||||| | Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| |||| | | | || || |||||| || | || ||||||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| ||||| |||||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 109 bits (120), Expect = 6e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | ||| ||||| || ||||||||||| || || || || |||| || Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || || || | ||| ||||||| ||| | || ||| || | | | Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 273 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | |||| || | | | | ||||| ||| |||||| |||| ||||| | Sbjct 272 GAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTG 216 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || ||||| ||||||||||| Sbjct 215 TTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq44495 Length=1402 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||||| | || || |||||||| |||||||| Sbjct 727 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAA 786 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||| || | || | || ||||||||| ||| |||| | ||| | Sbjct 787 GATCAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTCACAT 845 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| || | |||||||| || || || | |||| Sbjct 846 TATCGATCGTGTCAGAGCTC---TCCACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCT 902 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 903 TCACGAAGATCTGCAT 918 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| || || || ||||| || || || || | Sbjct 1159 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACC 1218 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||| ||||| || ||||| || |||| |||||||| | || | | |||||| Sbjct 1219 ATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTT 1278 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| ||| || | | | | || || ||||| || |||| ||||| Sbjct 1279 GTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 1338 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || |||||||| || |||||||| Sbjct 1339 GGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 >seq281289 Length=787 Score = 100 bits (110), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||||||||| ||||| ||||||||||| || |||| ||| || | Sbjct 769 ACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCC 710 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||||||||| || |||| ||||||||| | || | | ||| || Sbjct 709 ATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTT 650 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 || ||| || || | | | | || || ||| |||||| || | || Sbjct 649 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---TTCCACCTCTAAGGT 593 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||||| || || || || || || |||||||||||| Sbjct 592 GATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 >seq280556 Length=777 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| ||||||| || || | || || | ||||| |||||||| Sbjct 343 TCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCAGCGAAA 402 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| |||||||| | || | | |||||||||| |||||| || | | Sbjct 403 ATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTG 462 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || || | |||||||| || || |||| ||||| Sbjct 463 TCGATAGTGTCTGAGCTC---TCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTCTTC 519 Query 42195 ACAAAGATTTGCAT 42208 ||||| |||||||| Sbjct 520 ACAAATATTTGCAT 533 >seq122851 Length=247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | |||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 109 AATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATATTGTAATCTGCCAGAGTCCTA 50 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 |||| || || ||||||||||| || || | | ||| ||||| Sbjct 49 CCGTCTTCAAGTTGCTTACCAGCAAAAATCAACCTCTGTTGGTC 6 >seq21568 Length=652 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||||| || |||||||| || |||||||| || ||||| | | || || Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTGCCATCTTC 387 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| || || || || || | ||||||||| | ||| | | ||| |||| | | Sbjct 388 CAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGT-CTT 446 Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | ||||| || | | | | |||||| ||| || || | |||||||| | Sbjct 447 GAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCT 506 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || | ||||| || || || |||||| Sbjct 507 TGCCAGTCAATGTCTTCACGAAAATCTGCATT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541141040702080