Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq281664 98.7 1e-15 seq21568 82.4 8e-11 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | |||||||| || ||||||||||| Sbjct 550 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCA 609 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | ||||| || | |||| || | ||||||||| || || Sbjct 610 AGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGG 669 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 670 ATACCTTCCTTGTC-CTGAATCTTGGCCTTCACGTTG-TCAATTGTGTCTGAAGACTCAA 727 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || || || |||||||| |||||||| |||||| Sbjct 728 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATG 777 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| |||||||||||||| | ||| | ||||| || || || |||| Sbjct 353 TTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGG 412 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | | || ||||| || || || ||||| ||||| ||| |||||| || Sbjct 413 CAAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTC-CTGAATTTTTGCCTTC 471 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||| || | ||| ||||||| || | || || ||||||| ||| Sbjct 472 ACGTTG-TCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGT 530 Query 138597 TTTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 531 CTTAACGAAGATCTGCAT 548 >seq21568 Length=652 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || |||| || | || ||||| | |||| |||||||| |||||||| || ||| Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | || || ||||| || || | | |||| || | ||| ||||| || | Sbjct 371 -AGAGTTCTGCCA-TCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTG 428 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | || || |||||||| ||| | ||||| || | |||| | | |||||||| || Sbjct 429 GGATTCCCTCTTTGTCT-TGAATCTTTGTCTTCACATTGT-CGATGGTGTCGGAACTTTC 486 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || ||||||| || || || ||||||||||| Sbjct 487 TACTTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494369704832640