Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_011373.1
Length=46872
Score E
Sequences producing significant alignments: (Bits) Value
seq203971 558 1e-154
seq196695 517 3e-142
seq194196 513 4e-141
seq188881 480 2e-131
seq138539 405 2e-108
seq114352 255 2e-63
seq106406 131 5e-26
>seq203971
Length=367
Score = 558 bits (618), Expect = 1e-154
Identities = 338/357 (95%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 22575 GGCAGTGTTATCCATGCGAACGGAATTACGCACAATATCATCGTGAATAAGACAGGAAGG 22634
|| || |||||||| |||||||| ||||| ||||| |||||||| |||| |||||||||
Sbjct 1 GGTAGCGTTATCCACGCGAACGGGATTACACACAAGATCATCGTAAATAGGACAGGAAGA 60
Query 22635 ATTCTGCGCGCGCGACGTTCGTAGAATTTGAGAATGCTTAGTTTGTTCTCCTGCCGCTCT 22694
||||| ||||| || || ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 61 ATTCTTCGCGCCCGGCGCTCGTAGAATTTGAGAATGCTTAGCTTGTTCTCCTGGCGTTCT 120
Query 22695 TTCAGGAGAATCGATGTAATTAGATATCCGCTGATTACAAAAAATACATCTACACCAACA 22754
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCAGGAGGATCGATGTAATTAGATATCCGCTGATTACAAAAAATACATCTACACCAACA 180
Query 22755 AAACCGCCGCTGAACTGTGAGAGACCGACGTGGAACAGGATTACAGGTAGTACGGCTATC 22814
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCCGCCGCTGAACTGTGAGAGACCGACGTGGAACAGGATTACAGGTAGTACGGCTATC 240
Query 22815 GCTCGTAGACCATCGATTTCAGGGCGATATGCCAGGAACTTGTTGTGCATCGGATTCCCT 22874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCGTAGACCATCGATTTCAGGGCGATATGCCAGGAACTTGTTGTGCATCGGATTCCCT 300
Query 22875 TCGGTTGGGCGCGGATCAGCCGCGAATGATACCGGCTGTTGGGGTTGAACGTCATGC 22931
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 TCGGTTGGGCGCGGATCAGCCGCGAATGATACCGGCTTTTGGGGTTGAACGTCATGC 357
>seq196695
Length=351
Score = 517 bits (572), Expect = 3e-142
Identities = 325/351 (93%), Gaps = 0/351 (0%)
Strand=Plus/Minus
Query 22046 GCCAATGGCTGTTCCTGGGCGTGCAAACAAAATGATCAGCGCTGTACCTATCGTTGGGTA 22105
||||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||
Sbjct 351 GCCAATGGCTGTTCCTGGGCGTGCAAACAGAATGATTAGTGCTGTACCCATCGTTGGGTA 292
Query 22106 AAGTGCATTTGAGCCAGGGAACGGAGTCGCTTGATCAAATGCGTAGACCGAGTATGCGAT 22165
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 291 AAGTGCATTTGAGCCAGGGAATGGAGTCGCCTGATCAAATGCGTAGACCGAGTATGCGAT 232
Query 22166 TAATGCGAGGCCAGCTATGCCTCCAACGTGGCTGCCGCGAAGATTCGGTCTCTTGAAGAT 22225
||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||
Sbjct 231 CAATGCGAGGCCAGCTATGCCTCCAATGTGGCTGCCGCGAAGACTCGGCCTCTTGTAGAG 172
Query 22226 GATAAGAGCCACAATCGCGCCAACCATCAATTCCCAGGCGCGTGACGGAAGCAGGTAGAA 22285
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 GATAAGAGCCACAATCGCGCCAACCATCAATTCCCAGGCGCGAGACGGAAGCAGGTAGAA 112
Query 22286 TGCCGTCATTGGCTCTGCTGACACTGTTACGTCTGAGTATATAAAGCTCGCAATCCCGAT 22345
|||||||||||||||||| |||||||||| ||||| |||||||||||||||| ||||||
Sbjct 111 TGCCGTCATTGGCTCTGCGGACACTGTTATTTCTGAATATATAAAGCTCGCAACCCCGAT 52
Query 22346 TGCGGCAATAGCTGCGCATAGAGCAGTGAATCCAAATCTCCAAAAGATCAT 22396
|| |||||||| ||||||||| |||| || ||||||||||| || |||||
Sbjct 51 TGTGGCAATAGTTGCGCATAGTGCAGCAAAACCAAATCTCCACAAAATCAT 1
>seq194196
Length=346
Score = 513 bits (568), Expect = 4e-141
Identities = 321/344 (93%), Gaps = 1/344 (0%)
Strand=Plus/Minus
Query 20816 CAGACCGCAGATGGGACGGCGGCGGCTGGTACAGAAACCTTCGCCTTCGTGATAGAGAAC 20875
|||||||||||||| |||||||||||||| || ||||| || || |||||||||||||||
Sbjct 344 CAGACCGCAGATGGAACGGCGGCGGCTGGGACGGAAACTTTTGCTTTCGTGATAGAGAAC 285
Query 20876 CTATAACTATGGCGCTGGGGCGGTTTACCGCCCCCGCCTT-CAAAGGTTCGTCGCTACAT 20934
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 284 CTATAACTATGGCGCTGGGGCGGTTTACCGCCCCAATTTTTCAAAGGTTCGTAGCTACAT 225
Query 20935 CTCTGCTCTTAATAAACACGTCGCCGAGTCCAATTCGCTCAAATTCATTTCGATGGCTGG 20994
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 224 CTCTGCTCTTAATAAACACGTCGCCGAGTCCAATTCGCTCAAACTCATTTCGATGGCTGA 165
Query 20995 AACTGGCTTTCAACATGATCGAGCGAATGAATGCTGCTGTAAGGTGGTTCCAGTCAGTGA 21054
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 164 CACTGGCTTTCAACATGATCGAGCGAATAAATGCTGCTGTAAGGTGGTTCCAGTCAGTGA 105
Query 21055 TAAACGGAACGCCGTCCGACTCATACGGGCACGCGGACTTCTCATTCTTGCACGTCATAC 21114
|||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| |
Sbjct 104 TAAACGGAACACCGTCCGATTCATAGGGGCACGCGGACTTCTCATTCTTGCATGTCATCC 45
Query 21115 CTATAAGGTCGATATACTCGAATGGTACGGTGTAGCTTTTGAAA 21158
||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 44 CTATAAGATCGATATACTCGAATGGTACTGTGTAGCTTTTGAAA 1
>seq188881
Length=336
Score = 480 bits (532), Expect = 2e-131
Identities = 308/336 (92%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 21176 ATCCTGTTTTTCAGCTGGGTAAGATGCTATGTCACGACAAATTGAGGCGTCTCTCCACGA 21235
|| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGCTGTTTTTCAGTTGGGTAAGACGCTATGTCACGACAAATTGAGGCGTCTCTCCATGA 60
Query 21236 TACGAACATTGCCATGAGGCAAGAGTCGTGTTTCTTACCGTCCATTTGGTAGTAGCTTCC 21295
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACAAACATCGCCATGAGGCAAGAGTCGTGTTTCTTACCGTCCATTTGGTAGTAGCTTCC 120
Query 21296 TATGACGTATGTCTTAGGGCTTTTCCCAACGGAGTGAACATAGCTTAGTATCTCAAACCT 21355
|||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||| ||
Sbjct 121 TATGACGTATGTCTTAGGACTTTTTCCAACGGAGTGGACATAGTTTAGTATCTCAAATCT 180
Query 21356 GAATCGATTCGATGAGTATTCAAATGGTCTGTGAGAGGTAAGTATTATCTTCTCTACTGA 21415
|||||||||||| || |||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 181 GAATCGATTCGACGAATATTCAAATGGTCTGTGAGATGTAAGTATTATCTTCTCGACGGA 240
Query 21416 CCGCATTAACTCTTTGTCGTTGATGGTTTTATTGAAGTCTGCACAGTTAGCTTTGTATGG 21475
||||||| |||||||||||||| |||| ||||||||||| ||||| |||||||||||
Sbjct 241 TTGCATTAATTCTTTGTCGTTGATAATTTTTTTGAAGTCTGCGCAGTTTGCTTTGTATGG 300
Query 21476 CGCTCCCAACGGGTCGGACTTTATAATTCCGTTTTC 21511
||| ||||| ||||||||||||||| |||||||||
Sbjct 301 CGCGCCCAATGGGTCGGACTTTATAGCTCCGTTTTC 336
>seq138539
Length=264
Score = 405 bits (448), Expect = 2e-108
Identities = 248/264 (94%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 19255 GATCGACACAATTCAGCAGCTAGCGGACTCTATTCCAATCCGGGTCTGGGAGTTCGCGGA 19314
||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 264 GATCGACACCATTCAGCAACTCGCGGACTCTATTCCGATCCGGGTCTGGGAGTTCGCGTC 205
Query 19315 GCTGGTCTCTGACAAGCCGTCGCCTGACCCGGCGACTTGGAACTGGACGCCGGCGTTCCA 19374
||| |||||||||||||||||| | |||||| |||| ||||||||||| |||||||||||
Sbjct 204 GCTCGTCTCTGACAAGCCGTCGGCGGACCCGTCGACCTGGAACTGGACTCCGGCGTTCCA 145
Query 19375 GGCGATGGTAGATACCGCTGAGTCCTACATGCAGTCATCTGGAGCGAAGCAAATCACCTG 19434
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 144 GGCGATGGTAGATACCGCTGAGTCCTACATGCAGTCATCTGGAGCAAGGCGAATCACCTG 85
Query 19435 CTATGCCGGGCCTGGCACGTTTCTGATTGACTCAATTGTGTGGCGCTCTGGTGTGCACAT 19494
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 84 CTATGCCGGGCCTGGCACGTTTTTGATTGACTCAATTGTGTGGCGCTCTGGTGTGCACAT 25
Query 19495 GTATTTTGGAGGTGCTGAGCTAAA 19518
||||||||||||||||||||||||
Sbjct 24 GTATTTTGGAGGTGCTGAGCTAAA 1
>seq114352
Length=239
Score = 255 bits (282), Expect = 2e-63
Identities = 200/239 (84%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 19568 AAGCTAAGTGATATCGGTTTCTATGGCCCTGGAATAGTTAACGGTGACAAGGATAGTTTC 19627
|| ||||| |||||||| |||||||| ||||| |||||||||||||| ||||||| ||||
Sbjct 239 AAACTAAGCGATATCGGGTTCTATGGTCCTGGTATAGTTAACGGTGATAAGGATATTTTC 180
Query 19628 GATCCGGAGCATAGGCAGCACGGTATTCACTGTGTAGCGAAGAAAGTAAAGGTGAAAGAT 19687
| ||||| |||||||||||||| ||||| || || || || | ||||||||| || |||
Sbjct 179 GGGCCGGAACATAGGCAGCACGGAATTCATTGCGTGGCAAAAAGAGTAAAGGTAAAGGAT 120
Query 19688 CTTTTTATTGAAAATATCGGCAGCAGTTCGGTTTTCTCGTTGGGCGATGGCGTAATTTTT 19747
|||| ||||| ||||| || || || || ||||||||| |||| ||||| |||||||||
Sbjct 119 CTTTACATTGAGAATATAGGAAGTAGCTCAGTTTTCTCGCTGGGTGATGGTGTAATTTTT 60
Query 19748 CGTCCAACAATCCCAGAAGGTGACTTTCAATGCGAGGATTGCGAGGTTTCTGGGTGCAC 19806
| |||||||||||||| || || ||||| |||||||| || |||||||| ||||||||
Sbjct 59 AGGCCAACAATCCCAGAGGGAGATTTTCAGTGCGAGGACTGTGAGGTTTCAGGGTGCAC 1
>seq106406
Length=233
Score = 131 bits (144), Expect = 5e-26
Identities = 150/200 (75%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 17979 GACGATCAAAAGAGGCGTTATCAGCGCTGCCAGGGACGAGCCGAGGACTTTGTACGGCCA 18038
||||||||| | ||||| ||| || || | |||||||| ||||| || ||| ||
Sbjct 221 GACGATCAAGCGCGGCGTGATCTCTGCGGCACGAGACGAGCCCAGGACCACGTTCGGGCA 162
Query 18039 CATGTACACGCCGCAGAACATGTCACAGGCG--CTCAAGATAAGCAAAAGCGCGCCGTCA 18096
||||||| |||||||||||||| |||| || ||||| |||| |||||||||||
Sbjct 161 CATGTACTCGCCGCAGAACATGGAT--GGCGTACTGAAGATCAGCATCAGCGCGCCGTCT 104
Query 18097 GAAGATGATTATGATGGCGTTGATGTTGCGTTCACGAACGCAAAAGGCTGGATTGAGGAT 18156
|| || || || || ||||| ||||||| |||| || || || |||||||| || |||
Sbjct 103 GAGGACGACTACGACGGCGTCGATGTTGAGTTCGTCAATGCCAACGGCTGGATCGAAGAT 44
Query 18157 ACCGTTCCTTGTAGGCTTCC 18176
||||||| || | |||||
Sbjct 43 ACCGTTCAGTGCCGCCTTCC 24
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149325794614496
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