Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq203971 558 1e-154 seq196695 517 3e-142 seq194196 513 4e-141 seq188881 480 2e-131 seq138539 405 2e-108 seq114352 255 2e-63 seq106406 131 5e-26 >seq203971 Length=367 Score = 558 bits (618), Expect = 1e-154 Identities = 338/357 (95%), Gaps = 0/357 (0%) Strand=Plus/Plus Query 22575 GGCAGTGTTATCCATGCGAACGGAATTACGCACAATATCATCGTGAATAAGACAGGAAGG 22634 || || |||||||| |||||||| ||||| ||||| |||||||| |||| ||||||||| Sbjct 1 GGTAGCGTTATCCACGCGAACGGGATTACACACAAGATCATCGTAAATAGGACAGGAAGA 60 Query 22635 ATTCTGCGCGCGCGACGTTCGTAGAATTTGAGAATGCTTAGTTTGTTCTCCTGCCGCTCT 22694 ||||| ||||| || || ||||||||||||||||||||||| ||||||||||| || ||| Sbjct 61 ATTCTTCGCGCCCGGCGCTCGTAGAATTTGAGAATGCTTAGCTTGTTCTCCTGGCGTTCT 120 Query 22695 TTCAGGAGAATCGATGTAATTAGATATCCGCTGATTACAAAAAATACATCTACACCAACA 22754 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCAGGAGGATCGATGTAATTAGATATCCGCTGATTACAAAAAATACATCTACACCAACA 180 Query 22755 AAACCGCCGCTGAACTGTGAGAGACCGACGTGGAACAGGATTACAGGTAGTACGGCTATC 22814 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCCGCCGCTGAACTGTGAGAGACCGACGTGGAACAGGATTACAGGTAGTACGGCTATC 240 Query 22815 GCTCGTAGACCATCGATTTCAGGGCGATATGCCAGGAACTTGTTGTGCATCGGATTCCCT 22874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCTCGTAGACCATCGATTTCAGGGCGATATGCCAGGAACTTGTTGTGCATCGGATTCCCT 300 Query 22875 TCGGTTGGGCGCGGATCAGCCGCGAATGATACCGGCTGTTGGGGTTGAACGTCATGC 22931 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 301 TCGGTTGGGCGCGGATCAGCCGCGAATGATACCGGCTTTTGGGGTTGAACGTCATGC 357 >seq196695 Length=351 Score = 517 bits (572), Expect = 3e-142 Identities = 325/351 (93%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 22046 GCCAATGGCTGTTCCTGGGCGTGCAAACAAAATGATCAGCGCTGTACCTATCGTTGGGTA 22105 ||||||||||||||||||||||||||||| |||||| || |||||||| ||||||||||| Sbjct 351 GCCAATGGCTGTTCCTGGGCGTGCAAACAGAATGATTAGTGCTGTACCCATCGTTGGGTA 292 Query 22106 AAGTGCATTTGAGCCAGGGAACGGAGTCGCTTGATCAAATGCGTAGACCGAGTATGCGAT 22165 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 291 AAGTGCATTTGAGCCAGGGAATGGAGTCGCCTGATCAAATGCGTAGACCGAGTATGCGAT 232 Query 22166 TAATGCGAGGCCAGCTATGCCTCCAACGTGGCTGCCGCGAAGATTCGGTCTCTTGAAGAT 22225 ||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||| Sbjct 231 CAATGCGAGGCCAGCTATGCCTCCAATGTGGCTGCCGCGAAGACTCGGCCTCTTGTAGAG 172 Query 22226 GATAAGAGCCACAATCGCGCCAACCATCAATTCCCAGGCGCGTGACGGAAGCAGGTAGAA 22285 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 171 GATAAGAGCCACAATCGCGCCAACCATCAATTCCCAGGCGCGAGACGGAAGCAGGTAGAA 112 Query 22286 TGCCGTCATTGGCTCTGCTGACACTGTTACGTCTGAGTATATAAAGCTCGCAATCCCGAT 22345 |||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||| Sbjct 111 TGCCGTCATTGGCTCTGCGGACACTGTTATTTCTGAATATATAAAGCTCGCAACCCCGAT 52 Query 22346 TGCGGCAATAGCTGCGCATAGAGCAGTGAATCCAAATCTCCAAAAGATCAT 22396 || |||||||| ||||||||| |||| || ||||||||||| || ||||| Sbjct 51 TGTGGCAATAGTTGCGCATAGTGCAGCAAAACCAAATCTCCACAAAATCAT 1 >seq194196 Length=346 Score = 513 bits (568), Expect = 4e-141 Identities = 321/344 (93%), Gaps = 1/344 (0%) Strand=Plus/Minus Query 20816 CAGACCGCAGATGGGACGGCGGCGGCTGGTACAGAAACCTTCGCCTTCGTGATAGAGAAC 20875 |||||||||||||| |||||||||||||| || ||||| || || ||||||||||||||| Sbjct 344 CAGACCGCAGATGGAACGGCGGCGGCTGGGACGGAAACTTTTGCTTTCGTGATAGAGAAC 285 Query 20876 CTATAACTATGGCGCTGGGGCGGTTTACCGCCCCCGCCTT-CAAAGGTTCGTCGCTACAT 20934 |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 284 CTATAACTATGGCGCTGGGGCGGTTTACCGCCCCAATTTTTCAAAGGTTCGTAGCTACAT 225 Query 20935 CTCTGCTCTTAATAAACACGTCGCCGAGTCCAATTCGCTCAAATTCATTTCGATGGCTGG 20994 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 224 CTCTGCTCTTAATAAACACGTCGCCGAGTCCAATTCGCTCAAACTCATTTCGATGGCTGA 165 Query 20995 AACTGGCTTTCAACATGATCGAGCGAATGAATGCTGCTGTAAGGTGGTTCCAGTCAGTGA 21054 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 164 CACTGGCTTTCAACATGATCGAGCGAATAAATGCTGCTGTAAGGTGGTTCCAGTCAGTGA 105 Query 21055 TAAACGGAACGCCGTCCGACTCATACGGGCACGCGGACTTCTCATTCTTGCACGTCATAC 21114 |||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| | Sbjct 104 TAAACGGAACACCGTCCGATTCATAGGGGCACGCGGACTTCTCATTCTTGCATGTCATCC 45 Query 21115 CTATAAGGTCGATATACTCGAATGGTACGGTGTAGCTTTTGAAA 21158 ||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 44 CTATAAGATCGATATACTCGAATGGTACTGTGTAGCTTTTGAAA 1 >seq188881 Length=336 Score = 480 bits (532), Expect = 2e-131 Identities = 308/336 (92%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 21176 ATCCTGTTTTTCAGCTGGGTAAGATGCTATGTCACGACAAATTGAGGCGTCTCTCCACGA 21235 || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1 ATGCTGTTTTTCAGTTGGGTAAGACGCTATGTCACGACAAATTGAGGCGTCTCTCCATGA 60 Query 21236 TACGAACATTGCCATGAGGCAAGAGTCGTGTTTCTTACCGTCCATTTGGTAGTAGCTTCC 21295 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACAAACATCGCCATGAGGCAAGAGTCGTGTTTCTTACCGTCCATTTGGTAGTAGCTTCC 120 Query 21296 TATGACGTATGTCTTAGGGCTTTTCCCAACGGAGTGAACATAGCTTAGTATCTCAAACCT 21355 |||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||| || Sbjct 121 TATGACGTATGTCTTAGGACTTTTTCCAACGGAGTGGACATAGTTTAGTATCTCAAATCT 180 Query 21356 GAATCGATTCGATGAGTATTCAAATGGTCTGTGAGAGGTAAGTATTATCTTCTCTACTGA 21415 |||||||||||| || |||||||||||||||||||| ||||||||||||||||| || || Sbjct 181 GAATCGATTCGACGAATATTCAAATGGTCTGTGAGATGTAAGTATTATCTTCTCGACGGA 240 Query 21416 CCGCATTAACTCTTTGTCGTTGATGGTTTTATTGAAGTCTGCACAGTTAGCTTTGTATGG 21475 ||||||| |||||||||||||| |||| ||||||||||| ||||| ||||||||||| Sbjct 241 TTGCATTAATTCTTTGTCGTTGATAATTTTTTTGAAGTCTGCGCAGTTTGCTTTGTATGG 300 Query 21476 CGCTCCCAACGGGTCGGACTTTATAATTCCGTTTTC 21511 ||| ||||| ||||||||||||||| ||||||||| Sbjct 301 CGCGCCCAATGGGTCGGACTTTATAGCTCCGTTTTC 336 >seq138539 Length=264 Score = 405 bits (448), Expect = 2e-108 Identities = 248/264 (94%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 19255 GATCGACACAATTCAGCAGCTAGCGGACTCTATTCCAATCCGGGTCTGGGAGTTCGCGGA 19314 ||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| Sbjct 264 GATCGACACCATTCAGCAACTCGCGGACTCTATTCCGATCCGGGTCTGGGAGTTCGCGTC 205 Query 19315 GCTGGTCTCTGACAAGCCGTCGCCTGACCCGGCGACTTGGAACTGGACGCCGGCGTTCCA 19374 ||| |||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||| Sbjct 204 GCTCGTCTCTGACAAGCCGTCGGCGGACCCGTCGACCTGGAACTGGACTCCGGCGTTCCA 145 Query 19375 GGCGATGGTAGATACCGCTGAGTCCTACATGCAGTCATCTGGAGCGAAGCAAATCACCTG 19434 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 144 GGCGATGGTAGATACCGCTGAGTCCTACATGCAGTCATCTGGAGCAAGGCGAATCACCTG 85 Query 19435 CTATGCCGGGCCTGGCACGTTTCTGATTGACTCAATTGTGTGGCGCTCTGGTGTGCACAT 19494 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 84 CTATGCCGGGCCTGGCACGTTTTTGATTGACTCAATTGTGTGGCGCTCTGGTGTGCACAT 25 Query 19495 GTATTTTGGAGGTGCTGAGCTAAA 19518 |||||||||||||||||||||||| Sbjct 24 GTATTTTGGAGGTGCTGAGCTAAA 1 >seq114352 Length=239 Score = 255 bits (282), Expect = 2e-63 Identities = 200/239 (84%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 19568 AAGCTAAGTGATATCGGTTTCTATGGCCCTGGAATAGTTAACGGTGACAAGGATAGTTTC 19627 || ||||| |||||||| |||||||| ||||| |||||||||||||| ||||||| |||| Sbjct 239 AAACTAAGCGATATCGGGTTCTATGGTCCTGGTATAGTTAACGGTGATAAGGATATTTTC 180 Query 19628 GATCCGGAGCATAGGCAGCACGGTATTCACTGTGTAGCGAAGAAAGTAAAGGTGAAAGAT 19687 | ||||| |||||||||||||| ||||| || || || || | ||||||||| || ||| Sbjct 179 GGGCCGGAACATAGGCAGCACGGAATTCATTGCGTGGCAAAAAGAGTAAAGGTAAAGGAT 120 Query 19688 CTTTTTATTGAAAATATCGGCAGCAGTTCGGTTTTCTCGTTGGGCGATGGCGTAATTTTT 19747 |||| ||||| ||||| || || || || ||||||||| |||| ||||| ||||||||| Sbjct 119 CTTTACATTGAGAATATAGGAAGTAGCTCAGTTTTCTCGCTGGGTGATGGTGTAATTTTT 60 Query 19748 CGTCCAACAATCCCAGAAGGTGACTTTCAATGCGAGGATTGCGAGGTTTCTGGGTGCAC 19806 | |||||||||||||| || || ||||| |||||||| || |||||||| |||||||| Sbjct 59 AGGCCAACAATCCCAGAGGGAGATTTTCAGTGCGAGGACTGTGAGGTTTCAGGGTGCAC 1 >seq106406 Length=233 Score = 131 bits (144), Expect = 5e-26 Identities = 150/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 17979 GACGATCAAAAGAGGCGTTATCAGCGCTGCCAGGGACGAGCCGAGGACTTTGTACGGCCA 18038 ||||||||| | ||||| ||| || || | |||||||| ||||| || ||| || Sbjct 221 GACGATCAAGCGCGGCGTGATCTCTGCGGCACGAGACGAGCCCAGGACCACGTTCGGGCA 162 Query 18039 CATGTACACGCCGCAGAACATGTCACAGGCG--CTCAAGATAAGCAAAAGCGCGCCGTCA 18096 ||||||| |||||||||||||| |||| || ||||| |||| ||||||||||| Sbjct 161 CATGTACTCGCCGCAGAACATGGAT--GGCGTACTGAAGATCAGCATCAGCGCGCCGTCT 104 Query 18097 GAAGATGATTATGATGGCGTTGATGTTGCGTTCACGAACGCAAAAGGCTGGATTGAGGAT 18156 || || || || || ||||| ||||||| |||| || || || |||||||| || ||| Sbjct 103 GAGGACGACTACGACGGCGTCGATGTTGAGTTCGTCAATGCCAACGGCTGGATCGAAGAT 44 Query 18157 ACCGTTCCTTGTAGGCTTCC 18176 ||||||| || | ||||| Sbjct 43 ACCGTTCAGTGCCGCCTTCC 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149325794614496