Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq21568 111 1e-19 seq281664 109 4e-19 seq281289 104 2e-17 seq279770 100 2e-16 seq280556 93.3 3e-14 seq126021 82.4 5e-11 >seq21568 Length=652 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| |||| || | || ||||| || || || || ||||| ||||||||||| ||| Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| |||| | ||||| | ||| ||||| || | |||| | ||| ||||| ||| Sbjct 371 -AGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 429 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| || ||||| ||| || | || ||| | || || || ||| | ||||||| Sbjct 430 GATTCCCTCTTTGTCTTGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTAC 489 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||| || || || ||||| ||||| Sbjct 490 TTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq281664 Length=792 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| || | || | ||||| | || Sbjct 118 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGC 177 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 178 TTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTT 237 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | | || || || ||||| ||||| || |||||| Sbjct 238 GCCTTAACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTC 297 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 298 AGGGTCTTGACAAAGATCTGCAT 320 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || ||||| || || || |||||||| || ||| ||| |||| Sbjct 565 AAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTTCGGCCGTCC 624 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || ||||| |||||| | || | | ||||||||| || || ||||||||||| Sbjct 625 TCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGGATACCTTCCTTGTCC 684 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| || || | || || || || | || || || ||||| ||||| Sbjct 685 TGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTC 744 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| |||||||||||||| Sbjct 745 TTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq281289 Length=787 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || || |||||||| || |||||||||||||| |||||| | Sbjct 552 CCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 493 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | || || ||||| | || | | || ||||| || Sbjct 492 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGG 433 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || ||||||| || ||| | || |||||||| | |||| || Sbjct 432 ATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCACC 373 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || |||||||| ||||| |||||||| Sbjct 372 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 >seq279770 Length=767 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| |||||||| || || || || ||||| ||| |||| ||| |||| || Sbjct 619 AACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTC 560 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | |||| | |||||| || ||| || || |||||||| Sbjct 559 AAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTG 500 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || ||||| | |||| || || | ||||||||||| Sbjct 499 GATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTT 440 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 439 GCCAGTAAGGGTCTTCACAAATATTTGCAT 410 >seq280556 Length=777 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| ||||| |||||| | | | || | ||||| Sbjct 553 ACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCTAAAGTCCTGCCATCTTCC 612 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || |||||| | || || | |||||||| ||| || ||||| || || Sbjct 613 AATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGG 672 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || |||||||| | | || || || || || || ||||| Sbjct 673 ATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACTTCCAAAGTGATTGTTTTT 732 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | || || |||||||||||||| Sbjct 733 CCTGTTAAGGTCTTCACAAAAATTTGCAT 761 >seq126021 Length=250 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| |||||||||||| || | | | ||||| | || Sbjct 219 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGC 160 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | ||||| | || || || ||||| ||||||||||| ||| || Sbjct 159 TTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTA 100 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || |||| || |||| ||||| || || || || Sbjct 99 GCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTG 40 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||||||||| Sbjct 39 AGCGTTTTGACGAAAATTTGCAT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356063019084920