Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq44495 122 8e-23 seq281289 114 1e-20 seq279770 102 8e-17 seq281664 100 3e-16 seq21568 98.7 9e-16 seq280556 86.0 6e-12 >seq44495 Length=1402 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || || || || ||| || | | ||| || Sbjct 937 CACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTC 996 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||||||| |||||| | |||||| || || || || ||||||||||| Sbjct 997 CAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1056 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| |||| || | |||||||| |||||| || || | ||| | || | Sbjct 1057 GATCTTAGCCTTGACGTTG-TCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCT 1115 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| || || || ||||||||||| Sbjct 1116 TGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | || | || ||||| || || || || |||||| | Sbjct 1148 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCA 1207 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| ||||| || || || ||| |||| | || ||||| || || || Sbjct 1208 AGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 1267 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| ||| || | || || Sbjct 1268 ATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACC 1327 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || ||||| || ||||| ||||| ||||| Sbjct 1328 TCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 >seq281289 Length=787 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| ||||| || | |||||| || | || || |||||||| || || |||||| | Sbjct 553 TCCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGC 494 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || ||||| |||||||| | || | | ||||| || ||||| Sbjct 493 GAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGG 434 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || ||| ||||| ||| | | || | || || | ||| || || Sbjct 433 GATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCAC 374 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||| |||||||| ||||| || ||||| Sbjct 373 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||||||| | || || || || ||||||||||| || | Sbjct 781 TCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGC 722 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || || ||||| |||||| | || | || |||||| || || || Sbjct 721 CAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGG 662 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || || ||| || ||| | | |||| ||| || | || || || Sbjct 661 GATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCAC 602 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||| || || || ||||| Sbjct 601 CTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 554 >seq279770 Length=767 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||||||| | ||||| || || || |||||||||||| | Sbjct 408 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 349 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || || || || ||||| |||| | | ||| || ||||| || Sbjct 348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 289 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || | | ||| | | || ||| | | || | ||||| | || || || Sbjct 288 ATGCCCTCTTTAT-CTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCAC 230 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | |||||||| || || |||||||| || || ||||| Sbjct 229 CTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||| || || ||||||||||| ||| | | || ||| || || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| | |||| || ||| ||||| || || || ||||||||||| | Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | || | || || | ||| || || || | || | |||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 >seq281664 Length=792 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | |||||||| || || || ||||| || | Sbjct 550 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCA 609 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||||||||||| |||| | || ||| || || || || Sbjct 610 AGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGG 669 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| || || ||| | |||| || | ||||| | | ||| || Sbjct 670 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTG-TCAATTGTGTCTGAAGACTCAAC 728 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || ||||| |||||||| |||||||| |||||| Sbjct 729 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATG 777 >seq21568 Length=652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| |||||||||||||| ||| || ||| ||| || | ||||||||| Sbjct 119 GTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 178 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||||||| ||| ||||| ||||| || ||||||||||| Sbjct 179 GCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC 222 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | ||||||||| | || || || ||||| || |||||||| | Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || || || || |||||| | |||||| || || || Sbjct 371 AGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 430 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| ||||| ||| | | || ||| | | |||| |||||| | ||| || || Sbjct 431 ATTCCCTCTTTGTCT-TGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTAC 489 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| |||| || || || ||||||||||| Sbjct 490 TTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq280556 Length=777 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || |||||||| ||||| || ||| || || ||| || | || || ||| Sbjct 337 GTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCA 396 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| || ||||| || ||||| || |||||||||||| |||||| ||| Sbjct 397 GCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTC 456 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||||| ||||| | || | || || || || | || Sbjct 457 ACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTC 516 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 517 TTCACAAATATTTGCAT 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473687287498880