Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq44495 122 8e-23
seq281289 114 1e-20
seq279770 102 8e-17
seq281664 100 3e-16
seq21568 98.7 9e-16
seq280556 86.0 6e-12
>seq44495
Length=1402
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || ||||| || || || || || || ||| || | | ||| ||
Sbjct 937 CACCAAGTGCAGGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTACCATCTTC 996
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| ||||||||| |||||| | |||||| || || || || |||||||||||
Sbjct 997 CAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1056
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
||| || ||||| |||| || | |||||||| |||||| || || | ||| | || |
Sbjct 1057 GATCTTAGCCTTGACGTTG-TCAATGGTGTCCGAACTCTCAACCTCTAAGGTGATGGTCT 1115
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||||||| || || || |||||||||||
Sbjct 1116 TGCCGGTCAACGTCTTGACGAAAATCTGCAT 1146
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||||||| | || | || ||||| || || || || |||||| |
Sbjct 1148 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCA 1207
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| ||||| || || || ||| |||| | || ||||| || || ||
Sbjct 1208 AGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGA 1267
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||| | | |||| ||| || | || ||
Sbjct 1268 ATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACC 1327
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||||| || ||||| || ||||| ||||| |||||
Sbjct 1328 TCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374
>seq281289
Length=787
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| ||||| || | |||||| || | || || |||||||| || || |||||| |
Sbjct 553 TCCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGGC 494
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || ||| ||| || ||||| |||||||| | || | | ||||| || |||||
Sbjct 493 GAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGG 434
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| || ||| ||||| ||| | | || | || || | ||| || ||
Sbjct 433 GATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCAC 374
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||||||||||| |||||||| ||||| || |||||
Sbjct 373 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | ||||||||| | || || || || ||||||||||| || |
Sbjct 781 TCCACCACGAAGACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGC 722
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| ||||| ||| || || ||||| |||||| | || | || |||||| || || ||
Sbjct 721 CAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGG 662
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| || || ||| || ||| | | |||| ||| || | || || ||
Sbjct 661 GATTCCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCAC 602
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||||| || || || ||||| || || || |||||
Sbjct 601 CTCTAAGGTGATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCAT 554
>seq279770
Length=767
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||||||| | ||||| || || || |||||||||||| |
Sbjct 408 CCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 349
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || || || || ||||| |||| | | ||| || ||||| ||
Sbjct 348 AGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 289
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||| || | | ||| | | || ||| | | || | ||||| | || || ||
Sbjct 288 ATGCCCTCTTTAT-CTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCAC 230
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | |||||||| || || |||||||| || || |||||
Sbjct 229 CTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||||||| | ||||| || || ||||||||||| ||| | | || ||| || ||
Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || ||||| | |||| || ||| ||||| || || || ||||||||||| |
Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
||||| ||||| | || | || || | ||| || || || | || | ||||||
Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || || || ||||| || |||||
Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410
>seq281664
Length=792
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | |||||||| || || || ||||| || |
Sbjct 550 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCA 609
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||||||||||||| |||| | || ||| || || || ||
Sbjct 610 AGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGG 669
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || ||||||||| || || ||| | |||| || | ||||| | | ||| ||
Sbjct 670 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTG-TCAATTGTGTCTGAAGACTCAAC 728
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || ||||| |||||||| |||||||| ||||||
Sbjct 729 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATG 777
>seq21568
Length=652
Score = 98.7 bits (108), Expect = 9e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| |||||||||||||| ||| || ||| ||| || | |||||||||
Sbjct 119 GTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 178
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020
|| ||||||||| ||| ||||| ||||| || |||||||||||
Sbjct 179 GCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTC 222
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| | ||||||||| | || || || ||||| || |||||||| |
Sbjct 311 CCACCACGCAGTCGAAGCACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT 370
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || || || || || || |||||| | |||||| || || ||
Sbjct 371 AGAGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 430
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||| ||||| ||| | | || ||| | | |||| |||||| | ||| || ||
Sbjct 431 ATTCCCTCTTTGTCT-TGAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTAC 489
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || ||||| |||| || || || |||||||||||
Sbjct 490 TTCCAAAGTGATGGTCTTGCCAGTCAATGTCTTCACGAAAATCTGCAT 537
>seq280556
Length=777
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || |||||||| ||||| || ||| || || ||| || | || || |||
Sbjct 337 GTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGCTTCCCA 396
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| || ||||| || ||||| || |||||||||||| |||||| |||
Sbjct 397 GCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTAGCCTTC 456
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | ||||| ||||| | || | || || || || | ||
Sbjct 457 ACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTTAAGGTC 516
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| || |||||
Sbjct 517 TTCACAAATATTTGCAT 533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473687287498880
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