Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq48980 116 3e-21
seq280556 113 4e-20
seq44495 104 2e-17
seq21568 104 2e-17
seq281289 102 7e-17
seq281664 98.7 9e-16
seq279770 96.9 3e-15
seq126021 95.1 1e-14
seq81485 84.2 2e-11
seq277496 82.4 7e-11
>seq48980
Length=3483
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || |||||||| || || ||||| ||||| || ||||| ||||| || || |||
Sbjct 1050 CCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCA 991
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| |||| || || || ||| | || | || ||||||||||||||
Sbjct 990 AGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGT 931
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || ||||| ||||| ||| |||| || | ||| || ||| ||||||
Sbjct 930 ATTCCCTCCTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACC 871
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| | || || ||||| || ||||| || || || |||||
Sbjct 870 TCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824
>seq280556
Length=777
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | || ||| | || || || ||||||||||| || |||||||||
Sbjct 532 ATCCCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCG 591
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| |||||||| || || ||| | || || | ||| ||||| ||
Sbjct 592 GCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGT 651
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || |||||||||||||| | | || | || | || | || | || || ||| |||
Sbjct 652 GGGATCCCTTCTTTATCTTGGA-TCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTC 710
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | ||||| || |||| || || ||||||||||||||
Sbjct 711 AACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761
>seq44495
Length=1402
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | |||||| || || || || || ||||| ||||| |||||||||
Sbjct 1145 ATACCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCG 1204
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | ||| || || ||| | || | || ||||||||| ||
Sbjct 1205 GCAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGG 1264
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || || || || ||| || | || | || | ||| || || || ||
Sbjct 1265 GGAATACCCTCCTTGTCCTGGATCTTTGCCTTAA-CGTTATCGATGGTATCAGAGGATTC 1323
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | ||||| || || || || ||||| |||||||||||
Sbjct 1324 AACCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374
>seq21568
Length=652
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGT 45189
||| | |||||| ||||||||||||||||| || ||||| ||| | ||| | ||| |
Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AGAGTTCTGCCATCTT 386
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
||| ||| || ||||| | |||| | |||||||| || || || || ||||| ||||
Sbjct 387 CCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTT 446
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
|||| ||| || | || | |||||||||| || ||||| | ||| | || |
Sbjct 447 GAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCT 506
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| || | || || || ||||| |||||
Sbjct 507 TGCCAGTCAATGTCTTCACGAAAATCTGCAT 537
>seq281289
Length=787
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || |||||||| ||||| || ||||||||| || |||| | ||| || | ||
Sbjct 528 TGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCGAGCTGC 469
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | || | | ||||||||| || || || || |||||||| ||||||||
Sbjct 468 TTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTGAATTTTG 409
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | || | || || ||| || || || || || | |||||||||||
Sbjct 408 GCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGCCGGTG 349
Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341
|||||||| ||||| |||||||||
Sbjct 348 AGAGTTTTCACAAAGATTTGCATC 325
>seq281664
Length=792
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || ||||| ||||| || || ||
Sbjct 547 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCT 606
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || ||||| |||||||| ||| | || | || || ||||| ||
Sbjct 607 GCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGG 666
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| || || ||||| || || | || | || | ||||| ||||||||
Sbjct 667 GGGATACCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTGTCTGAAGACTC 725
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || | || || ||||| |||||||| ||||||||||||||
Sbjct 726 AACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776
>seq279770
Length=767
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || || | ||| | ||| || || |||||||| |||||||| ||||||
Sbjct 411 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 352
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | ||| || || || | || | | || ||||| ||
Sbjct 351 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 292
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| |||||||||||||| ||| || | || | ||||| || ||
Sbjct 291 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 232
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | |||||||| || || |||||||| || |||||||||
Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATC 181
>seq126021
Length=250
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | ||| || || || || || |||||||| || || ||||||
Sbjct 246 ATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 187
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | || || ||||| | ||||| | |||||| |||||
Sbjct 186 GCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGG 127
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| ||||| || |||||||| || ||||| || | ||||| || ||
Sbjct 126 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCA 67
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| || || || || || ||||| || |||||||||||
Sbjct 66 ACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17
>seq81485
Length=213
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| || | ||| ||||| ||| | || | ||||||||||| || ||||| ||||| ||
Sbjct 213 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 154
Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303
|| || || || |||| || | || | || || || ||||| || || || || |
Sbjct 153 GTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGA 95
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||||||||| ||||| || || |||||||||
Sbjct 94 TGGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCATC 57
>seq277496
Length=739
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| | |||||||| || | || || ||||| ||||||||||| ||||||||
Sbjct 276 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 217
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| |||||||| || || || | || |||| |||||||| || |||
Sbjct 216 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 157
Query 45234 ATGCCTTCTTTATCTTGAAT 45253
|| ||||| || || || ||
Sbjct 156 ATACCTTCCTTGTCCTGCAT 137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450279304995520
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