Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq48980 116 3e-21 seq280556 113 4e-20 seq44495 104 2e-17 seq21568 104 2e-17 seq281289 102 7e-17 seq281664 98.7 9e-16 seq279770 96.9 3e-15 seq126021 95.1 1e-14 seq81485 84.2 2e-11 seq277496 82.4 7e-11 >seq48980 Length=3483 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || |||||||| || || ||||| ||||| || ||||| ||||| || || ||| Sbjct 1050 CCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCA 991 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || ||| | || | || |||||||||||||| Sbjct 990 AGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGT 931 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||| ||||| ||| |||| || | ||| || ||| |||||| Sbjct 930 ATTCCCTCCTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTCTCGACC 871 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || || ||||| || ||||| || || || ||||| Sbjct 870 TCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 824 >seq280556 Length=777 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || ||| | || || || ||||||||||| || ||||||||| Sbjct 532 ATCCCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCG 591 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || || ||| | || || | ||| ||||| || Sbjct 592 GCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGT 651 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||||||||| | | || | || | || | || | || || ||| ||| Sbjct 652 GGGATCCCTTCTTTATCTTGGA-TCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTC 710 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || |||| || || |||||||||||||| Sbjct 711 AACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761 >seq44495 Length=1402 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || || || ||||| ||||| ||||||||| Sbjct 1145 ATACCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCG 1204 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||| || || ||| | || | || ||||||||| || Sbjct 1205 GCAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGG 1264 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || ||| || | || | || | ||| || || || || Sbjct 1265 GGAATACCCTCCTTGTCCTGGATCTTTGCCTTAA-CGTTATCGATGGTATCAGAGGATTC 1323 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||| || || || || ||||| ||||||||||| Sbjct 1324 AACCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 >seq21568 Length=652 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGT 45189 ||| | |||||| ||||||||||||||||| || ||||| ||| | ||| | ||| | Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCT-AGAGTTCTGCCATCTT 386 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| ||| || ||||| | |||| | |||||||| || || || || ||||| |||| Sbjct 387 CCAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTT 446 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| ||| || | || | |||||||||| || ||||| | ||| | || | Sbjct 447 GAATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCT 506 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | || || || ||||| ||||| Sbjct 507 TGCCAGTCAATGTCTTCACGAAAATCTGCAT 537 >seq281289 Length=787 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || |||||||| ||||| || ||||||||| || |||| | ||| || | || Sbjct 528 TGAAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCGAGCTGC 469 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | | ||||||||| || || || || |||||||| |||||||| Sbjct 468 TTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAGGGATTCCCTCTTTATCCTGAATTTTG 409 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | || || ||| || || || || || | ||||||||||| Sbjct 408 GCCTTCACATTGTCAATAGTATCAGAACTTTCCACCTCAAGGGTTATTGTTTTGCCGGTG 349 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 |||||||| ||||| ||||||||| Sbjct 348 AGAGTTTTCACAAAGATTTGCATC 325 >seq281664 Length=792 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || || || ||||| ||||| || || || Sbjct 547 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCT 606 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| |||||||| ||| | || | || || ||||| || Sbjct 607 GCAAGAGTTCGGCCGTCCTCCAACTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGG 666 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || ||||| || || | || | || | ||||| |||||||| Sbjct 667 GGGATACCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTGTCTGAAGACTC 725 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || ||||| |||||||| |||||||||||||| Sbjct 726 AACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 776 >seq279770 Length=767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || || | ||| | ||| || || |||||||| |||||||| |||||| Sbjct 411 ATCCCACCGCGAAGTCTAAGCACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCG 352 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| || || || | || | | || ||||| || Sbjct 351 GCAAGCGTTCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGT 292 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| |||||||||||||| ||| || | || | ||||| || || Sbjct 291 GGAATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCC 232 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | |||||||| || || |||||||| || ||||||||| Sbjct 231 ACCTCGAGGGTGATTGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATC 181 >seq126021 Length=250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| || || || || || |||||||| || || |||||| Sbjct 246 ATTCCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTTTGAATGTTGTAATCG 187 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || ||||| | ||||| | |||||| ||||| Sbjct 186 GCTAGTGTACGACCATCTTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGATCCGGG 127 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| || ||||| || | ||||| || || Sbjct 126 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCAGAGCTTTCA 67 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || || || || || ||||| || ||||||||||| Sbjct 66 ACTTCTAGTGTAATAGTCTTCCCCGTGAGCGTTTTGACGAAAATTTGCAT 17 >seq81485 Length=213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||| ||| | || | ||||||||||| || ||||| ||||| || Sbjct 213 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 154 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 || || || || |||| || | || | || || || ||||| || || || || | Sbjct 153 GTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGA 95 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||||||| ||||| || || ||||||||| Sbjct 94 TGGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCATC 57 >seq277496 Length=739 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | |||||||| || | || || ||||| ||||||||||| |||||||| Sbjct 276 CCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCA 217 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| || || || | || |||| |||||||| || ||| Sbjct 216 AGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGA 157 Query 45234 ATGCCTTCTTTATCTTGAAT 45253 || ||||| || || || || Sbjct 156 ATACCTTCCTTGTCCTGCAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450279304995520