Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq273947 116 5e-21 seq218924 93.3 5e-14 >seq273947 Length=700 Score = 116 bits (128), Expect = 5e-21 Identities = 190/273 (70%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || ||||||||||| || || || | ||||| ||||| || || Sbjct 307 AGCAAAATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCC 248 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | || || || |||||||||||||| | || || || ||||||||||| Sbjct 247 AGGCATTAATCCACGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGAT 188 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||||| || || || || | |||||||||||| || | | | || | Sbjct 187 TCCTTCAACACAAGCAAATGCCAAAATACGCTCGGCAAACGA---TTCCGTGCTGTCGAT 131 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||| | |||||| | ||||| |||| || ||| ||||| |||| ||| || ||| Sbjct 130 CCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAA 71 Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 | | |||| || || ||||||||| || Sbjct 70 TAATCGACTCTTCTCGTTTGAATCTTTGATATA 38 >seq218924 Length=406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 133/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 127559 TCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAA 127618 ||||| ||||| | || ||||| || || || || || ||||||||||| | || Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAGAGCAG 199 Query 127619 AATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || |||||||| || ||||| ||||| |||||||| || | ||||| || || Sbjct 200 AAACTACCTGAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGCGAAC 259 Query 127679 GA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGG 127737 || | | || | |||| |||||||| |||||| | |||||||||| || || || Sbjct 260 GATTCTGTAC----TGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGG 315 Query 127738 GACGGT 127743 ||| || Sbjct 316 GACAGT 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611167344889920