Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq279770 89.7 6e-13
seq281289 87.8 2e-12
seq44495 87.8 2e-12
seq81485 86.0 7e-12
seq48980 86.0 7e-12
seq21568 84.2 2e-11
>seq279770
Length=767
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||||| ||| ||||| || ||||||||||||| ||||| || |||| ||
Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || || || |||| | ||| || || | || | | ||||||||| |
Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || ||||| | | | || || |||||| || | || |||||||||
Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || ||||| ||||||||
Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||| | |||| ||||| ||||||||||| |||| || || || |||| ||
Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|| ||||| || || || || | | ||| ||||||| || | || ||| || ||
Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 272
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
||||| ||| | | | | ||||| ||| |||||| || | ||||| ||
Sbjct 271 AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGT 215
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || || ||||| || |||||||||||
Sbjct 214 TTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182
>seq281289
Length=787
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/220 (69%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||||||||| ||||| || ||||||||||| | | |||||| |
Sbjct 769 ACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCC 710
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || || || || || ||||| || | | ||||||||| | || | | ||| ||
Sbjct 709 ATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTT 650
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554
|| |||||| ||| | | | | || || ||| |||||| || | ||
Sbjct 649 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---TTCCACCTCTAAGGT 593
Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
||||||||| || || || ||||| || ||||||||||||
Sbjct 592 GATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553
>seq44495
Length=1402
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||||||| || || | || |||||| ||||| || || |||| || || || |
Sbjct 1159 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACC 1218
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || || ||||| |||||||| || | | |||||||| | || | | ||||||
Sbjct 1219 ATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTT 1278
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | | | | || || ||||| || || | |||||
Sbjct 1279 GTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 1338
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || ||||| || || || || ||||||||
Sbjct 1339 GGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374
>seq81485
Length=213
Score = 86.0 bits (94), Expect = 7e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||| ||||| |||||||| || | || |||||||| | || | | ||||||
Sbjct 212 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 153
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | ||| || || || || || | |||||
Sbjct 152 TCCTGGATCTTGGACTTGA-CGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGAT 94
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || |||||||| |||||||||||
Sbjct 93 GGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCAT 58
>seq48980
Length=3483
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/199 (70%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || || || | || || | |||||| ||||||||
Sbjct 1015 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGCTTACCGGCGAA 956
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | | |||||| ||| ||||| ||||| |
Sbjct 955 AATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTTGCCTTGACATT 896
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | || || ||| || || || | || ||||| || || || ||||||||
Sbjct 895 ATCGATGGTATCAGAACTC---TCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 839
Query 46579 AACAAAGATTTGCATTTTG 46597
|| ||||| ||||| |||
Sbjct 838 CACGAAGATCTGCATATTG 820
>seq21568
Length=652
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||||| || ||||||||||| ||||| || | |||||| | | || ||
Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTGCCATCTTC 387
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|| |||||||| || || |||| | ||||||||| | || | | ||| |||||
Sbjct 388 CAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 447
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | | | | |||||| ||| || |||| |||||||| ||
Sbjct 448 AATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCTT 507
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
||| |||| || || || || || ||||||
Sbjct 508 GCCAGTCAATGTCTTCACGAAAATCTGCATT 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563082637266240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |