Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq279770 89.7 6e-13 seq281289 87.8 2e-12 seq44495 87.8 2e-12 seq81485 86.0 7e-12 seq48980 86.0 7e-12 seq21568 84.2 2e-11 >seq279770 Length=767 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| ||| ||||| || ||||||||||||| ||||| || |||| || Sbjct 618 ACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACCGTCCTCA 559 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | ||| || || | || | | ||||||||| | Sbjct 558 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTTGTCTTGG 499 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || |||||| || | || ||||||||| Sbjct 498 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 439 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| |||||||| Sbjct 438 CCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||| | |||| ||||| ||||||||||| |||| || || || |||| || Sbjct 391 CACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTC 332 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || ||||| || || || || | | ||| ||||||| || | || ||| || || Sbjct 331 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTG 272 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | | | | ||||| ||| |||||| || | ||||| || Sbjct 271 AATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGT 215 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || ||||| || ||||||||||| Sbjct 214 TTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 182 >seq281289 Length=787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||||||| ||||| || ||||||||||| | | |||||| | Sbjct 769 ACGGAGCACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCC 710 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || || || || ||||| || | | ||||||||| | || | | ||| || Sbjct 709 ATCTTCAAGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTT 650 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 || |||||| ||| | | | | || || ||| |||||| || | || Sbjct 649 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCAGAGCT---TTCCACCTCTAAGGT 593 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||||||| || || || ||||| || |||||||||||| Sbjct 592 GATGGTTTTACCAGTGAGGGTTTTCACGAAGATTTGCATT 553 >seq44495 Length=1402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||| ||||| || || |||| || || || | Sbjct 1159 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCGGCAAGGGTACGACC 1218 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || ||||| |||||||| || | | |||||||| | || | | |||||| Sbjct 1219 ATCCTCTAGTTGCTTCCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTT 1278 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | | | | || || ||||| || || | ||||| Sbjct 1279 GTCCTGGATCTTTGCCTTAACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 1338 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || ||||| || || || || |||||||| Sbjct 1339 GGTTTTACCTGTCAGGGTCTTTACGAAAATTTGCAT 1374 >seq81485 Length=213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| ||||| |||||||| || | || |||||||| | || | | |||||| Sbjct 212 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 153 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | ||| || || || || || | ||||| Sbjct 152 TCCTGGATCTTGGACTTGA-CGTTGTCGATCGTATCAGATGACTCAACCTCAAGGGTGAT 94 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || |||||||| ||||||||||| Sbjct 93 GGTCTTGCCGGTTAGGGTTTTAACGAAGATTTGCAT 58 >seq48980 Length=3483 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || || | || || | |||||| |||||||| Sbjct 1015 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGCTTACCGGCGAA 956 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | | |||||| ||| ||||| ||||| | Sbjct 955 AATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTTGCCTTGACATT 896 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| || || || | || ||||| || || || |||||||| Sbjct 895 ATCGATGGTATCAGAACTC---TCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 839 Query 46579 AACAAAGATTTGCATTTTG 46597 || ||||| ||||| ||| Sbjct 838 CACGAAGATCTGCATATTG 820 >seq21568 Length=652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||||||||||| ||||| || | |||||| | | || || Sbjct 328 CACCAAATGCAGAGTTGATTCCTTTTGGATGTTGTAATCTGCTAGAGTTCTGCCATCTTC 387 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || |||| | ||||||||| | || | | ||| ||||| Sbjct 388 CAGTTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCTTG 447 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | | |||||| ||| || |||| |||||||| || Sbjct 448 AATCTTTGTCTTCACATTGTCGATGGTGTCGGAACTTTCTACTTCCAAAGTGATGGTCTT 507 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| |||| || || || || || |||||| Sbjct 508 GCCAGTCAATGTCTTCACGAAAATCTGCATT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563082637266240