Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq280556 95.1 8e-15 >seq280556 Length=777 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | |||||| ||||| || | || ||| ||||| || ||||||| Sbjct 531 CATC-CCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAAT 589 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| ||| | |||| |||||||| ||||| | |||||||| | || || || | Sbjct 590 CGGCTAAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTG 649 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||| || || || ||||| | | | || |||| || | Sbjct 650 GTGGGATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCT 709 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||||||| |||||||| || ||||| || || || || || ||||| Sbjct 710 CAACTTCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346077887905496