Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq44487 141 1e-28 seq273947 140 4e-28 seq42289 129 7e-25 seq218924 95.1 1e-14 >seq44487 Length=1401 Score = 141 bits (156), Expect = 1e-28 Identities = 277/400 (69%), Gaps = 22/400 (6%) Strand=Plus/Minus Query 15939 GTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 || || || || |||| ||| || |||||| | |||| |||||||| || || | || Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAAACCCATCCATTTCAGTTAGAA 335 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA---GCACTG---C 16050 ||||||||| |||||||| ||||| |||||| | ||||||| || || | Sbjct 334 GCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTC 281 Query 16051 GTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG 16110 ||| ||| || |||||||| ||||||| || || ||||| ||| |||||| | | Sbjct 280 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTC-CTTG 222 Query 16111 CGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 | |||| |||||||| ||||| || || || | ||||||||||||||| ||||| Sbjct 221 -GCCTTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAA 163 Query 16169 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227 | | | ||| || | || || |||||| | |||||| |||||||| ||| | Sbjct 162 CTCAGAACCTGAA-ATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTA 104 Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGC 16287 | | |||||| || || ||||| ||| | ||||| ||||| ||||| || | Sbjct 103 GCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGGAGAACACCTTTAGGAATGCGAGCTC 44 Query 16288 CACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || || | | ||||| || | ||||||||| ||||| Sbjct 43 CAACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCAC 4 >seq273947 Length=700 Score = 140 bits (154), Expect = 4e-28 Identities = 354/529 (67%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 || ||| | || || || ||| | | ||||| || |||||||| | |||||| | || Sbjct 77 GCAATCGAGACGGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATCGAC 136 Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218 | | || || ||||| ||||| | || |||||||| |||||||| || |||||| Sbjct 137 AGCA---CGGAATCGTTTGCCGAGCGTATTTTGGCATTTGCTTGTGTTGAAGGAATCTTC 193 Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||| ||| ||||||| | |||| ||| | || || || || | ||||| || ||| Sbjct 194 TTCTCAGGTAGCTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGATTAATGCCTGGACTC 253 Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 102336 ||||| || ||| | || || || |||||||| || || || ||||| | | | Sbjct 254 ACATTCTCAAATGAGTTGATTTCACGAGACGAGGGTCTTCATTGCGATTTTGCTTGTTTG 313 Query 102337 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACT---ATTCATTCTATTGTTA 102393 | ||| ||| ||| | | |||| || ||||| | | || ||||||| Sbjct 314 TTGTATTC--ATTGTTGAGGAAGAAAC---TGAGTGAGAATCGAGTGAATGAGATTGTTA 368 Query 102394 AGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCG 102453 |||||||| || || |||| || |||| | | |||||| | || ||||| | | Sbjct 369 CCGAAGCCGTAGATATAGAGAGGGAATTCGTGTGTGATGCCTTGCCTGTTGCTCTAGTTG 428 Query 102454 GTATGAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATT-GTTGAAG 102512 | |||||| || |||| | |||| ||||| | ||| | |||||||| |||| || Sbjct 429 GAATGAATGGCGATTTGATGAGCCAATACATTGAATTTGTGGCCGATAGATTGGTTGGAG 488 Query 102513 CAGATCGGGGTGCCTCCAATTTGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACAT 102571 | || || | ||| | || | ||| ||||||||||| | ||||| || Sbjct 489 CTTTAGGGTATGGC-AAAATCTATAATGTTCAA-AATCCATTTGATTGGATGGAATTGAT 546 Query 102572 TAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 | | | |||||||| || ||||| ||||| || |||||||| ||| Sbjct 547 TTCATTGCAAGGGAAGACCAATTTCTTTGAAAAAAGAGTTGGGGAATAT 595 >seq42289 Length=1066 Score = 129 bits (142), Expect = 7e-25 Identities = 276/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| || |||||||| || | |||||||| | Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||| || | | || | |||||||||||||||||||||||||| || ||||| Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 16094 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || | ||| | | | ||||| | |||||||| | ||| || |||||||| Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTC--TTGAAGCACCCACACC 863 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 |||||||| || ||||| | || || | ||| || ||| || || || ||| || Sbjct 862 AACAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCC 803 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||| ||||| |||||||| || || ||||| ||| || | ||||| || Sbjct 802 GGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGAGACACCC 743 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 742 TTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCAACCAC 683 Query 16331 CTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 682 TTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 635 >seq218924 Length=406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/245 (69%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 102033 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 102092 |||| |||||| ||| | || | ||||| |||||| ||||||||| | | | Sbjct 396 GAGATGTACAGTCTTCTCCTTGAAACCTATATCAAGGATTCGATTGAGAAGAATCGGTTA 337 Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 || || || |||| || || || | | || || || |||||||| |||||||| Sbjct 336 TTCCGTGCTATTGAAACTGTCCCCTGCGTCAAGAAAAAGGCTGATTGGGCGTTGAAGTGG 277 Query 102153 TTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 102209 |||| |||| | ||| || |||||||| | || || || || ||||||||| Sbjct 276 ATTGACAGTACAGAATCG------TTCGCTGAGCGGATTTTGGCGTTCGCTTGTGTTGAG 223 Query 102210 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 102269 || || |||||||| ||| |||||| |||||| ||| | || || || || || ||| Sbjct 222 GGAATTTTCTTCTCAGGTAGTTTCTGCTCTATTTTCTGGTTAAAAAAACGTGGGCTAATG 163 Query 102270 CCAGG 102274 || || Sbjct 162 CCTGG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618374950560640