Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq42289 129 7e-25 seq44487 125 8e-24 seq218924 123 3e-23 seq273947 114 2e-20 seq108436 86.0 7e-12 >seq42289 Length=1066 Score = 129 bits (142), Expect = 7e-25 Identities = 276/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || || |||||||| || | |||||||| | Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | || | |||||||||||||||||||||||||| ||||| || Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920 Query 9401 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | ||||| | || || || ||| || |||||||||| Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | || || | ||| || ||| || || || ||| || | Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578 | | ||| ||||| |||||||| || || ||||| ||| || | |||| | ||||| Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGA-GACACCCT 742 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 741 TTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCAACCACT 682 Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 681 TCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 635 >seq44487 Length=1401 Score = 125 bits (138), Expect = 8e-24 Identities = 270/398 (68%), Gaps = 18/398 (5%) Strand=Plus/Minus Query 9246 GTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAA 9303 || || || || |||| ||| || |||||| | |||| |||||||| || || | || Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAAACCCATCCATTTCAGTTAGAA 335 Query 9304 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAG---CACTGCGT- 9359 | ||||||| |||||||| ||||| |||||| | ||||||| || ||| | Sbjct 334 GCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTC 281 Query 9360 --TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 9417 || ||| || |||||||| ||||||| || ||||| || ||| |||||| || Sbjct 280 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGG 221 Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477 | | | |||||||| || || | || || | ||||||||||||||| ||||| | Sbjct 220 CCTTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACT 161 Query 9478 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536 | | ||| || | || || |||||| | |||||| |||||||| ||| || Sbjct 160 CAGAACCTGAA-ATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTAGC 102 Query 9537 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 | |||||| || || ||||| ||| | ||||| |||| ||||| || ||| Sbjct 101 AAAGTCTTCCCAGTTCCTGGAGGACCAACAAGGAGAACACCTTTAGGAATGCGAGCTCCA 42 Query 9597 CTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 || | | ||||| || | ||| ||||| ||||| Sbjct 41 ACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCAC 4 >seq218924 Length=406 Score = 123 bits (136), Expect = 3e-23 Identities = 192/270 (71%), Gaps = 7/270 (3%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || ||||||| ||||| | ||||||||||| || || ||||| || || Sbjct 113 TGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAATCCAGGCATTAGCCCA 172 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || || || ||||| |||||| |||||| || |||||||| || ||||| ||||| Sbjct 173 CGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 232 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTTCATTGC 117464 || ||||| |||| ||||| ||||| ||| || | |||||| ||| |||| || Sbjct 233 GCGAACGCCAAAATCCGCTCAGCGAA----CGATTCTGTACTGTCAATCCACTTCAACGC 288 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 117524 ||| | ||||| |||| | || || ||||||| || || |||||| | ||||| Sbjct 289 CCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCACGGAATAACCGATTCTT 348 Query 117525 TTCAGATC-CATCCTTAATGTATTTGTCAA 117553 ||| ||| |||||| || || | |||| Sbjct 349 CTCA-ATCGAATCCTTGATATAGGTTTCAA 377 >seq273947 Length=700 Score = 114 bits (126), Expect = 2e-20 Identities = 165/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || |||||||| ||||| ||||| | ||||||||||| || || ||||| | || Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || || |||||||| |||| | |||||| || ||||||||||| || || ||||| Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTTCATTGC 117464 ||||| || |||| |||||||| || ||| | || |||| | ||| || | || Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAA----CGATTCCGTGCTGTCGATCCACTTTAACGC 119 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515 ||| | |||||||||| | ||| || || || | ||| || |||||| Sbjct 118 CCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAA 68 >seq108436 Length=234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 ||||| || ||| || ||||||||||| || | ||||||||||||||||| | ||| Sbjct 67 AAAATGAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTT 126 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATT 106359 ||| ||| ||||||||||| |||||| |||| Sbjct 127 GACCTTCTAGCAGTCTCAACAGGATAATAATT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587730672226880