Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq42289 129 7e-25
seq44487 125 8e-24
seq218924 123 3e-23
seq273947 114 2e-20
seq108436 86.0 7e-12
>seq42289
Length=1066
Score = 129 bits (142), Expect = 7e-25
Identities = 276/407 (68%), Gaps = 4/407 (1%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| || || || |||||||| || | |||||||| |
Sbjct 1039 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTTCCACC 980
Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
| ||| || | | || | |||||||||||||||||||||||||| ||||| ||
Sbjct 979 TCCAAGACCTGCCCCTCTCTGTCTCCCCACGGCATCAATCTCATCAATGAACACAATGCA 920
Query 9401 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
|| | ||| | ||| | ||||| | || || || ||| || ||||||||||
Sbjct 919 AGGA-GCTTTGGACTTGGCTTTGTCAAACAAGTCCCGTACTCTTGAAGCACCCACACCAA 861
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519
|||||| || ||||| | || || | ||| || ||| || || || ||| || |
Sbjct 860 CAAACAATTCTACAAACTCTGAAGCAGCACACGAGAAGAATGGCACCCCAGCTTCCCCGG 801
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578
| | ||| ||||| |||||||| || || ||||| ||| || | |||| | |||||
Sbjct 800 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCGGGCGGTCCAACAAGGA-GACACCCT 742
Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638
||| || || || ||| | ||| | ||||| | || | ||||| || |
Sbjct 741 TTTGGGATTTTAGCTCCAAGAGCTGTGTACTTATCAGGGTTTTTCAAGAAATCAACCACT 682
Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685
|||| ||||||| ||||| |||| || ||||||| | |||
Sbjct 681 TCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 635
>seq44487
Length=1401
Score = 125 bits (138), Expect = 8e-24
Identities = 270/398 (68%), Gaps = 18/398 (5%)
Strand=Plus/Minus
Query 9246 GTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAA 9303
|| || || || |||| ||| || |||||| | |||| |||||||| || || | ||
Sbjct 392 GTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAAACCCATCCATTTCAGTTAGAA 335
Query 9304 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAG---CACTGCGT- 9359
| ||||||| |||||||| ||||| |||||| | ||||||| || ||| |
Sbjct 334 GCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC------ACCACCAATGCCAGTGCCTC 281
Query 9360 --TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 9417
|| ||| || |||||||| ||||||| || ||||| || ||| |||||| ||
Sbjct 280 TTTGACGTCCAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGG 221
Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477
| | | |||||||| || || | || || | ||||||||||||||| ||||| |
Sbjct 220 CCTTCTTGAAGAGATCACGTACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACT 161
Query 9478 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536
| | ||| || | || || |||||| | |||||| |||||||| ||| ||
Sbjct 160 CAGAACCTGAA-ATGGAGAAAAACGGGACACCTGCTTCACCAGCAATGGCCTTGGCTAGC 102
Query 9537 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596
| |||||| || || ||||| ||| | ||||| |||| ||||| || |||
Sbjct 101 AAAGTCTTCCCAGTTCCTGGAGGACCAACAAGGAGAACACCTTTAGGAATGCGAGCTCCA 42
Query 9597 CTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634
|| | | ||||| || | ||| ||||| |||||
Sbjct 41 ACAGCAGTGAACCTCTCGGGCTTCTTAAGAAACTCCAC 4
>seq218924
Length=406
Score = 123 bits (136), Expect = 3e-23
Identities = 192/270 (71%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
|| || || ||||||| ||||| | ||||||||||| || || ||||| || ||
Sbjct 113 TGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGAACGTTAATCCAGGCATTAGCCCA 172
Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405
|| || || ||||| |||||| |||||| || |||||||| || ||||| |||||
Sbjct 173 CGTTTTTTTAACCAGAAAATAGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAA 232
Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTTCATTGC 117464
|| ||||| |||| ||||| ||||| ||| || | |||||| ||| |||| ||
Sbjct 233 GCGAACGCCAAAATCCGCTCAGCGAA----CGATTCTGTACTGTCAATCCACTTCAACGC 288
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 117524
||| | ||||| |||| | || || ||||||| || || |||||| | |||||
Sbjct 289 CCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCAATAGCACGGAATAACCGATTCTT 348
Query 117525 TTCAGATC-CATCCTTAATGTATTTGTCAA 117553
||| ||| |||||| || || | ||||
Sbjct 349 CTCA-ATCGAATCCTTGATATAGGTTTCAA 377
>seq273947
Length=700
Score = 114 bits (126), Expect = 2e-20
Identities = 165/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Minus
Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345
|| |||||||| ||||| ||||| | ||||||||||| || || ||||| | ||
Sbjct 294 TGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCATTAATCCA 235
Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405
|| || |||||||| |||| | |||||| || ||||||||||| || || |||||
Sbjct 234 CGTTTTTTCAACCAGAAAATGGAGCAGAAGCTACCTGAGAAGAAGATTCCTTCAACACAA 175
Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTTCATTGC 117464
||||| || |||| |||||||| || ||| | || |||| | ||| || | ||
Sbjct 174 GCAAATGCCAAAATACGCTCGGCAAA----CGATTCCGTGCTGTCGATCCACTTTAACGC 119
Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 117515
||| | |||||||||| | ||| || || || | ||| || ||||||
Sbjct 118 CCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATAA 68
>seq108436
Length=234
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327
||||| || ||| || ||||||||||| || | ||||||||||||||||| | |||
Sbjct 67 AAAATGAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGTCTGTGTCTTAGATTT 126
Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATT 106359
||| ||| ||||||||||| |||||| ||||
Sbjct 127 GACCTTCTAGCAGTCTCAACAGGATAATAATT 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587730672226880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |