Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq282295 91.5 2e-13 seq52514 84.2 3e-11 >seq282295 Length=801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| |||||| || ||||| || |||||||||||||| || || || | Sbjct 541 GAGAATCCTGCTTGGTATACTCAGTACACGCCATATCAAGCTGAGATTTCCCAAGGTCGT 600 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| |||| | ||||| ||||| | |||||||| ||||| || || || || | Sbjct 601 CTTGAATCTTTGCTTAATTATCAAACTTTAATCACAGATCTCACTGGTCTTCCCATGTCC 660 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||||| ||||| || || ||||| ||| Sbjct 661 AATGCTTCATTGCTTGATGAAGGGACTGCTGCCGCTGAAGCTATG 705 >seq52514 Length=1911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 ||||||||||||| || ||||| || | |||| | ||| |||| |||||||| Sbjct 1557 TTACATATCCATCCACTCATGGAGTGTATGAAGAAGGCATTGATGAGATTTGTAAGATCA 1498 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGT 159672 ||||||||||||| ||||| || ||| | ||||| || || | ||||| |||||| || Sbjct 1497 TTCATGAGAATGGAGGTCAAGTCTATATGGATGGAGCCAACATGAATGCCCAGGTATGT 1439 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 159664 CAGGTAGGTCTAGCAAAACCATG-TGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 ||||| |||||| ||| ||| | || | ||| || ||||| || ||||| || | || Sbjct 1259 CAGGTGGGTCTAACAAGCCCAGGATGGAT-TGGAGCTGATGTTTGCCATCTCAATCTCCA 1201 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| || |||||||||||||| || || |||||| | || ||||||||||| Sbjct 1200 CAAAACATTTTGCATTCCACATGGAGGAGGTGGCCCTGGCATGGGCCCTATTGGTGT 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585808431528320