Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq281664 118 7e-22 seq48980 104 2e-17 seq44495 100 2e-16 >seq281664 Length=792 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| | | || | ||||| || || ||||||||||| ||||| | Sbjct 320 TTCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 379 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| |||||||| ||||||||||| || | || |||||||||| | | Sbjct 380 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGG 439 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || || ||| | || | ||| | ||| | Sbjct 440 GGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGA 499 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | |||| ||| ||||| ||||| || | |||||| || |||||||||||| Sbjct 500 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCATA 549 >seq48980 Length=3483 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| |||| |||| |||| ||| || ||||| || Sbjct 1014 TCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAA 955 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || |||||| ||||| || Sbjct 954 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTTGCCTTGAC--AT 897 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| ||| || |||| |||||||| || || || || || || Sbjct 896 --TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 839 Query 34967 CACAAAGATCTGCATATT 34984 ||| |||||||||||||| Sbjct 838 CACGAAGATCTGCATATT 821 >seq44495 Length=1402 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| |||||||| || | |||| | || |||| || || || || ||||| || Sbjct 1184 TCCTTCTGGATGTTATAATCGGCAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAG 1243 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||||| | || | ||||||||||| ||||| || | | | Sbjct 1244 ATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCCTTA---AC 1299 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| ||| || ||||| |||| ||| |||||||| || || || ||||| Sbjct 1300 GTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTT 1359 Query 34967 CACAAAGATCTGCATA 34982 || || || |||||| Sbjct 1360 TACGAAAATTTGCATA 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323426432915136