Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq281664 118 7e-22
seq48980 104 2e-17
seq44495 100 2e-16
>seq281664
Length=792
Score = 118 bits (130), Expect = 7e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||| | | || | ||||| || || ||||||||||| ||||| |
Sbjct 320 TTCCTCCCCTCAGACGAAGGACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 379
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
||| | | | |||| |||||||| ||||||||||| || | || |||||||||| | |
Sbjct 380 CAAGAGTCCTTCCATCCTCCAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGG 439
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | || |||||||| ||| || || ||| | || | ||| | ||| |
Sbjct 440 GGATGCCTTCCTTGTCCTGAATTTTTGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGA 499
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| |||| ||| ||||| ||||| || | |||||| || ||||||||||||
Sbjct 500 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACGAAGATCTGCATA 549
>seq48980
Length=3483
Score = 104 bits (114), Expect = 2e-17
Identities = 143/198 (72%), Gaps = 8/198 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| |||| |||| |||| ||| || ||||| ||
Sbjct 1014 TCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCATCTGCTTACCGGCGAAA 955
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | |||||||| || |||||| ||||| ||
Sbjct 954 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTATCCTGAATCTTTGCCTTGAC--AT 897
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
||||||| ||| ||| || |||| |||||||| || || || || || ||
Sbjct 896 --TATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 839
Query 34967 CACAAAGATCTGCATATT 34984
||| ||||||||||||||
Sbjct 838 CACGAAGATCTGCATATT 821
>seq44495
Length=1402
Score = 100 bits (110), Expect = 2e-16
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| |||||||| || | |||| | || |||| || || || || ||||| ||
Sbjct 1184 TCCTTCTGGATGTTATAATCGGCAAGGGTACGACCATCCTCTAGTTGCTTCCCGGCGAAG 1243
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| |||| |||||||||| | || | ||||||||||| ||||| || | | |
Sbjct 1244 ATAAGTCTTTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTT-TGCCTTA---AC 1299
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||||| ||| || ||||| |||| ||| |||||||| || || || |||||
Sbjct 1300 GTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCTGTCAGGGTCTT 1359
Query 34967 CACAAAGATCTGCATA 34982
|| || || ||||||
Sbjct 1360 TACGAAAATTTGCATA 1375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323426432915136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |