Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq273947 203 4e-47 seq220814 114 1e-20 seq218924 107 2e-18 >seq273947 Length=700 Score = 203 bits (224), Expect = 4e-47 Identities = 417/607 (69%), Gaps = 11/607 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||||||||| |||||||||||||||||||||| || || || | ||||| || || Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||||||||||| |||||||| ||||| | ||||| || | Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||| ||| | |||||| ||| | ||||||||| | || Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT- 18908 |||||| | ||||| | ||||| ||||||| ||| || || | | ||| Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 || | |||| || ||| | || | || | | | ||| |||||| |||| Sbjct 360 TCATTC-ACTCGATTCTCACTCAGTTTCTTCCTCAACA-ATGAATACAACAAACAAGCAA 303 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 |||| ||||| || |||||||||| ||||| ||||| || ||||| | ||||||| Sbjct 302 AATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCA 243 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086 | | ||| | |||||| |||||||| || | |||| | | | || || ||||| || ||| Sbjct 242 TTAATCCACGTTTTTTCAACCAGAAAAT-GGAGCAGAAGCTACCTGAGAAGAAGATTCCT 184 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || ||||| || | | | || || ||| | || | | | ||||| Sbjct 183 TCAACACAAGCAAATGCCAAAATACGCTCGGCA-AAC--GATTCCGTGCTGTCGATCCAC 127 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || | ||||||||||||||||| || ||||| || | ||||| || | | ||||| | Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68 Query 19207 TACA-TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | | ||| | || |||||| | ||| | || | | | ||||||||| || || Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8 Query 19266 ATGAATA 19272 || ||| Sbjct 7 GTGGATA 1 >seq220814 Length=412 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||||||||| |||||||||| |||||||||||||| || |||| ||||| || | Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||||||||||| || || || ||||| | | ||||| || | Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCC 18842 | ||||| | ||||||| || ||| | |||||| ||| | ||||||||| Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49 >seq218924 Length=406 Score = 107 bits (118), Expect = 2e-18 Identities = 173/244 (71%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| |||||| |||||||||||||| || || || ||||| ||||| ||||| || | Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071 | ||||| |||||||| || || | ||||||||||||||| |||| |||| || || Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCAGAAACTACCT 208 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| || || || || || || || | | | || | ||| | || Sbjct 209 GAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGC-GAAC--GATTCT 265 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | | |||||| |||| |||||||||||||| || || || || || | || || Sbjct 266 GTACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCA 325 Query 19192 ATAG 19195 |||| Sbjct 326 ATAG 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559964973247680