Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq273947 203 4e-47
seq220814 114 1e-20
seq218924 107 2e-18
>seq273947
Length=700
Score = 203 bits (224), Expect = 4e-47
Identities = 417/607 (69%), Gaps = 11/607 (2%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||||||||| |||||||||||||||||||||| || || || | ||||| || ||
Sbjct 600 TTTTGATATTCCCCAACTCTTTTTTCAAAGAAATTGGTCTTCCCTTGCAATGAAATCAAT 541
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| ||||||||||||||| |||||||| ||||| | ||||| || |
Sbjct 540 TCCATCCAATCAAATGGATTTTGAACATTATAGATTTTGCCATACCCTAAAGCTCCAACC 481
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
| |||||| || ||||||| ||| ||| | |||||| ||| | ||||||||| | ||
Sbjct 480 AATCTATCGGCCACAAATTCAATGTATTGGCTCATCAAATCGCCATTCATTCCAACTAGA 421
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT- 18908
|||||| | ||||| | ||||| ||||||| ||| || || | | |||
Sbjct 420 GCAACAGGCAAGGCATCACACACGAATTCCCTCTCTATATCTACGGCTTCGGTAACAATC 361
Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
|| | |||| || ||| | || | || | | | ||| |||||| ||||
Sbjct 360 TCATTC-ACTCGATTCTCACTCAGTTTCTTCCTCAACA-ATGAATACAACAAACAAGCAA 303
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
|||| ||||| || |||||||||| ||||| ||||| || ||||| | |||||||
Sbjct 302 AATCGCAATGAAGACCCTCGTCTCGTGAAATCAACTCATTTGAGAATGTGAGTCCAGGCA 243
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATACCT 19086
| | ||| | |||||| |||||||| || | |||| | | | || || ||||| || |||
Sbjct 242 TTAATCCACGTTTTTTCAACCAGAAAAT-GGAGCAGAAGCTACCTGAGAAGAAGATTCCT 184
Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146
|| || ||||| || | | | || || ||| | || | | | |||||
Sbjct 183 TCAACACAAGCAAATGCCAAAATACGCTCGGCA-AAC--GATTCCGTGCTGTCGATCCAC 127
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
|| | ||||||||||||||||| || ||||| || | ||||| || | | ||||| |
Sbjct 126 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACCGTCTCGATTGCACGAAATA-A 68
Query 19207 TACA-TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265
| | | ||| | || |||||| | ||| | || | | | ||||||||| || ||
Sbjct 67 TCGACTCTTCTCGTTTGAATCTTTGATATAAGTTTCGAGAAGAAGACTGTACATCTCAGA 8
Query 19266 ATGAATA 19272
|| |||
Sbjct 7 GTGGATA 1
>seq220814
Length=412
Score = 114 bits (126), Expect = 1e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||||||||| |||||||||| |||||||||||||| || |||| ||||| || |
Sbjct 221 TTTTGATATTCACCAACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAATGAAATCAAC 162
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| ||||||||||||||| || || || ||||| | | ||||| || |
Sbjct 161 TCCATCCAATCAAATGGATTTTGAACGTTGTAGATTTTCTCATACCCTAAGGCTCCAACC 102
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCC 18842
| ||||| | ||||||| || ||| | |||||| ||| | |||||||||
Sbjct 101 AACCTATCTGTCACAAATTCTATGTATTGGCTCATCAAATCCCCATTCATTCC 49
>seq218924
Length=406
Score = 107 bits (118), Expect = 2e-18
Identities = 173/244 (71%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012
||| |||||| |||||||||||||| || || || ||||| ||||| ||||| || |
Sbjct 90 ACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAACTCATTTGAGA 149
Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCA 19071
| ||||| |||||||| || || | ||||||||||||||| |||| |||| || ||
Sbjct 150 ACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCAGAAACTACCT 208
Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131
|| ||||| || || || || || || || | | | || | ||| | ||
Sbjct 209 GAGAAGAAAATTCCCTCAACACAAGCGAACGCCAAAATCCGCTCAGC-GAAC--GATTCT 265
Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191
|| | | |||||| |||| |||||||||||||| || || || || || | || ||
Sbjct 266 GTACTGTCAATCCACTTCAACGCCCAATCAGCCTTTTTCTTGACGCAGGGGACAGTTTCA 325
Query 19192 ATAG 19195
||||
Sbjct 326 ATAG 329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559964973247680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |