Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq106406 349 1e-91 >seq106406 Length=233 Score = 349 bits (386), Expect = 1e-91 Identities = 217/233 (93%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40652 ATATGCGGAGAAGACCATCAAGCGCGGCGTGATCTCTGCGGCCAGAGACGAGCCCAGGAC 40711 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 233 ATATGCGGAGAAGACGATCAAGCGCGGCGTGATCTCTGCGGCACGAGACGAGCCCAGGAC 174 Query 40712 AACGTTCGGGCACATGTACTCGCCGCAGAACATGGATGGTCCGCTGAGGATCAGCATCAG 40771 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 173 CACGTTCGGGCACATGTACTCGCCGCAGAACATGGATGGCGTACTGAAGATCAGCATCAG 114 Query 40772 CGCTCCGTCTGAGGACGACTATGACGGAGTCGATGTTGAGTTCGTCAATGCCAACGGCTG 40831 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 113 CGCGCCGTCTGAGGACGACTACGACGGCGTCGATGTTGAGTTCGTCAATGCCAACGGCTG 54 Query 40832 GATAGAAGATACCGTCCAGTGCCGCCTGCCCGGGGATGTCGGCAGGAAGGTCG 40884 ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||| Sbjct 53 GATCGAAGATACCGTTCAGTGCCGCCTTCCCGGCGATGTCGGCAGGAAGGTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156541156813168