Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq157809 414 3e-111 seq106406 361 2e-95 >seq157809 Length=287 Score = 414 bits (458), Expect = 3e-111 Identities = 264/287 (92%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 12750 AGGCGAACGAGGATGCAGCGAAGGCTCAGGCCTTCCGTGCAACGCTCAATGAATCGAACG 12809 |||||||||||||||| |||||||||||||| ||| |||||||||| || |||||||||| Sbjct 287 AGGCGAACGAGGATGCTGCGAAGGCTCAGGCATTCAGTGCAACGCTTAACGAATCGAACG 228 Query 12810 CAACTGCTCGGGCAGGATTTGCGATTGATCTGGCCGGATCGGGCAGCGGCGACAAGCTGA 12869 ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct 227 TAACTGCTCGGGCAGGATTTGCGATTGAACTGGCAGGATCGGGAAGCGGCGACAAGCTGA 168 Query 12870 GGGAGCGACTGCGCGCAGACCTGGAGATCCAGCAGGATTACAACAAACAGCTTGCCGATC 12929 | ||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||| Sbjct 167 GAGAGCGACTGCGGGCAGATCTGGAAATCCAGCAGGACTACAATAAACAGCTTGCCGATC 108 Query 12930 TACAGAAGCAGTTCAACAGCGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGACC 12989 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 107 TCCAGAAGCAGTTCAACAGTGCAGAAATCAGCAAGGAACTCTACGACCAAGAAACTGATC 48 Query 12990 TTCTGCGCCAGGCTCTCGCTGAGCGTCTGGAAATCCAGCATGAGTAC 13036 | |||||||||||| | || ||||| ||||||||||||||||||||| Sbjct 47 TCCTGCGCCAGGCTTTGGCCGAGCGCCTGGAAATCCAGCATGAGTAC 1 >seq106406 Length=233 Score = 361 bits (400), Expect = 2e-95 Identities = 220/233 (94%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 17849 ATATGCGGAGAAGACCATTAAGCGCGGCGTGATCTCTGCGGCCCGAGACGAGCCAAGGAC 17908 ||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 233 ATATGCGGAGAAGACGATCAAGCGCGGCGTGATCTCTGCGGCACGAGACGAGCCCAGGAC 174 Query 17909 CACATTCGGGCACATGTACTCGCCGCAGAACATGGATGGTCCACTGAGGATCAGCATCAG 17968 ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 173 CACGTTCGGGCACATGTACTCGCCGCAGAACATGGATGGCGTACTGAAGATCAGCATCAG 114 Query 17969 CGCGCCGTCTGAGGACGACTACGACGGCGTCGATGTAGAGTTCGTCAATGCCAACGGCTG 18028 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 113 CGCGCCGTCTGAGGACGACTACGACGGCGTCGATGTTGAGTTCGTCAATGCCAACGGCTG 54 Query 18029 GATCGAAGATACCGTCCAGTGCCGCCTGCCCGGCGATGTTGGCAGGAAGGTCG 18081 ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 53 GATCGAAGATACCGTTCAGTGCCGCCTTCCCGGCGATGTCGGCAGGAAGGTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172129272495584