Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq218924 98.7 1e-15 seq230622 87.8 2e-12 >seq218924 Length=406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/150 (76%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 37159 AATATTTAA-ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAAT 37217 |||| | || |||| ||||| |||||||||||||| | ||||||||||| ||||| Sbjct 80 AATAATGAATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCTTGAAATCAAC 139 Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA 37277 ||||| || || |||||||| ||||||| || | |||||| | ||| || || | ||| Sbjct 140 TCATTTGAGAACGTTAATCCAGGCATTAGCCCACGTTTTTTTAACCAGAAAATAG-AGCA 198 Query 37278 -AAAGATCCAGAAAAGAAAATACCTTCAAC 37306 ||| || || |||||||| || ||||| Sbjct 199 GAAACTACCTGAGAAGAAAATTCCCTCAAC 228 >seq230622 Length=445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||| ||||| |||||||| ||||||||||| || || ||||| |||||||| || || Sbjct 4 ACTGTACATCTCAGAGTGGATATTTTCAATGGCGATTTGAAATCCATAAAAGGCTCTGGC 63 Query 37526 TTCAGATAATTGAACATCGTT-AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||||| | |||||| || || | |||| || ||| | || || ||| || |||| Sbjct 64 TTCAGAGACTTGAACTTCTTTCATGAAACGTC-CAGCAAGATTCTCCAAAACAATGCCAT 122 Query 37585 CACTAGCTGCAAAGAAAGCAAGAAC 37609 || || |||||||| ||||| || Sbjct 123 CAGATGCAGCAAAGAAGGCAAGCAC 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590057762956480