Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_018284.1 Length=42123 Score E Sequences producing significant alignments: (Bits) Value seq254897 172 1e-38 seq11608 113 1e-20 >seq254897 Length=556 Score = 172 bits (190), Expect = 1e-38 Identities = 113/125 (90%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 TTTTATAGCAATCTCGATGGTGGTTCTGTGTATTTCGATAAGCTTCAAAATGTATCGATA 38405 |||||||||||||| |||||||||||||||||||||||||| |||||||| | |||||| Sbjct 556 TTTTATAGCAATCTTGATGGTGGTTCTGTGTATTTCGATAAAATTCAAAATTTGTCGATA 497 Query 38406 GAGCATGAAACTGCTATAGATGAAACTTTTACAATAGAAGTCGAAGAGGAAATTACGGAA 38465 |||||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||||| || Sbjct 496 GAGCATGAAATTGCTATAAATGAAACTTTCACAGTAGAAGTCGAAGAAGAAATTACGAAA 437 Query 38466 GATAC 38470 || || Sbjct 436 GAAAC 432 >seq11608 Length=226 Score = 113 bits (124), Expect = 1e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 36160 TCAAAACAGTGTTAGACGCTGCTAACGATCACTTATGGAAAGACGACAACCAAATTGCAC 36219 ||||||| |||||||| || || ||||||||| ||||||||||||| || ||||| | Sbjct 1 TCAAAACTGTGTTAGATGCAGCGAACGATCACCTATGGAAAGACGATAATCAAATCGTTG 60 Query 36220 ACATTGAAAGCTTTAAGCAATATGCAGAAGAACCAAAAATAATCATGAATGTAGAGGAAG 36279 | || | || ||||||||||||||||| ||||||||||| || | | || ||||||| Sbjct 61 AAATACACAGTTTTAAGCAATATGCAGAGGAACCAAAAATTATTTTAGAAGTGGAGGAAG 120 Query 36280 TG 36281 || Sbjct 121 TG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134184055736240