Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19]
305,112 sequences; 176,727,258 total letters
Query= NC_018284.1
Length=42123
Score E
Sequences producing significant alignments: (Bits) Value
seq254897 172 1e-38
seq11608 113 1e-20
>seq254897
Length=556
Score = 172 bits (190), Expect = 1e-38
Identities = 113/125 (90%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 38346 TTTTATAGCAATCTCGATGGTGGTTCTGTGTATTTCGATAAGCTTCAAAATGTATCGATA 38405
|||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 556 TTTTATAGCAATCTTGATGGTGGTTCTGTGTATTTCGATAAAATTCAAAATTTGTCGATA 497
Query 38406 GAGCATGAAACTGCTATAGATGAAACTTTTACAATAGAAGTCGAAGAGGAAATTACGGAA 38465
|||||||||| ||||||| |||||||||| ||| ||||||||||||| ||||||||| ||
Sbjct 496 GAGCATGAAATTGCTATAAATGAAACTTTCACAGTAGAAGTCGAAGAAGAAATTACGAAA 437
Query 38466 GATAC 38470
|| ||
Sbjct 436 GAAAC 432
>seq11608
Length=226
Score = 113 bits (124), Expect = 1e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 36160 TCAAAACAGTGTTAGACGCTGCTAACGATCACTTATGGAAAGACGACAACCAAATTGCAC 36219
||||||| |||||||| || || ||||||||| ||||||||||||| || ||||| |
Sbjct 1 TCAAAACTGTGTTAGATGCAGCGAACGATCACCTATGGAAAGACGATAATCAAATCGTTG 60
Query 36220 ACATTGAAAGCTTTAAGCAATATGCAGAAGAACCAAAAATAATCATGAATGTAGAGGAAG 36279
| || | || ||||||||||||||||| ||||||||||| || | | || |||||||
Sbjct 61 AAATACACAGTTTTAAGCAATATGCAGAGGAACCAAAAATTATTTTAGAAGTGGAGGAAG 120
Query 36280 TG 36281
||
Sbjct 121 TG 122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 134184055736240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |