Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lagenaria_20siceraria_20[genbank_20GCA_5F000466325.1_202013-09-19] 305,112 sequences; 176,727,258 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq279770 161 8e-35 seq281289 152 4e-32 seq280556 134 1e-26 seq281664 114 1e-20 seq126021 114 1e-20 seq21568 100 2e-16 seq277496 86.0 5e-12 >seq279770 Length=767 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || |||||||| || || |||||||||||||| | |||| | | || || Sbjct 390 ACCAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCGTCCTCA 331 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| ||||| || | | |||||| ||||| |||||||| |||||||||||| Sbjct 330 AGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCTTGA 271 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| |||||| | || | ||||| || ||||||| || || |||| |||||| Sbjct 270 ATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTTTTG 211 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||||| || || ||||| Sbjct 210 CCAGTGAGGGTTTTTACGAAGATTTGCAT 182 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||||||||| || || |||||||| ||||||| ||||| | Sbjct 625 ACGAAGAACCAAATGCAGGGTAGATTCCTTCTGAATATTGTAGTCGGCGAGAGTTCGACC 566 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | |||||||| ||||| |||| | ||||||||| || || || || || || Sbjct 565 GTCCTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATACCCTCCTT 506 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| | || | || ||||| ||||||| |||||||| | Sbjct 505 GTCTTGGATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAAT 446 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | || || |||||||| ||||| Sbjct 445 GGTTTTGCCAGTAAGGGTCTTCACAAATATTTGCAT 410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 |||| | |||||| || || |||||||| || ||||||||||| || ||| ||| | | Sbjct 767 TCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTGAATCTTAGCTTTCACATTAT 708 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | || ||||| | |||||||| | ||| | |||||||| || || ||||| |||| Sbjct 707 CAATTGTATCAGAGCTCTCCACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTTTTCACAA 648 Query 101460 ATATCTGCAT 101469 | |||||||| Sbjct 647 AAATCTGCAT 638 >seq281289 Length=787 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | |||||| | || || |||||||| |||||||||||||| || ||||||| Sbjct 554 TTCCACCACGTAAACGGAGCACCAAGTGAAGGGTTGATTCTTTTTGTATGTTATAATCGG 495 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| |||| |||| || | ||||| || ||||| || | | || || || || | Sbjct 494 CGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCAAAAATAAGCCTTTGCTGGTCTGGAG 435 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || || |||||||| |||||||| || ||| | || | ||| ||||| |||||| Sbjct 434 GGATTCCCTCTTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCAGAACTTTCCA 375 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || | ||||||||||| | |||||| ||||| || ||||| Sbjct 374 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || ||||| || || |||||||| || || | ||| | | |||| || Sbjct 762 ACCAAATGCAATGTTGATTCCTTCTGAATATTGTAGTCCGCCAAAGTGCGGCCATCTTCA 703 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| ||||| || || || | | ||| || || || || || || ||||||||||| Sbjct 702 AGTTGTTTACCAGCGAAAATTAGTCTCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGG 643 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || ||||| ||||||| || | |||| ||||| Sbjct 642 ATCTTAGCCTTCACATTATCGATGGTATCAGAGCTTTCCACCTCTAAGGTGATGGTTTTA 583 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| || || || ||||| Sbjct 582 CCAGTGAGGGTTTTCACGAAGATTTGCAT 554 >seq280556 Length=777 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || ||||| || ||||| ||||| || || |||||||| Sbjct 535 CCTCCACGAAGACGCAGCACCAAGTGAAGTGTCGATTCCTTTTGAATGTTATAATCGGCT 594 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| ||| |||| ||||||||||| || || || || || | ||||| || || || Sbjct 595 AAAGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAAATTAACCTTTGTTGGTCTGGTGGG 654 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || || ||| || | || | ||| || || | || ||| Sbjct 655 ATCCCTTCTTTATCTTGGATCTTAGCTTTAACGTTATCAATAGTATCTGAACTCTCAACT 714 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 715 TCCAAAGTGATTGTTTTTCCTGTTAAGGTCTTCACAAAAATTTGCAT 761 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| ||||| || ||||| || || | || | |||| ||||||||| Sbjct 331 TGGAGGGTGGATTCCTTTTGAATGTTGTAGTCAGCCAATGTACGTCCATCCTCCAATTGC 390 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| | || || || || ||||| || || || || || ||||| Sbjct 391 TTCCCAGCGAAAATCAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATTTTA 450 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| || | || ||||| | |||| || || || ||| Sbjct 451 GCCTTCACATTGTCGATAGTGTCTGAGCTCTCAACTTCTAATGTGATGGTCTTTCCTGTT 510 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || || |||||||| ||||| | | |||||| Sbjct 511 AAGGTCTTCACAAATATTTGCATCCCTCCACGAAGA 546 >seq281664 Length=792 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || |||||||| || | || || |||| |||| ||| Sbjct 118 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCCAGCTGC 177 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| ||||| || || || ||||| ||||| || || || |||||| Sbjct 178 TTTCCAGCAAAGATCAACCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATTTTT 237 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||| | ||||| || | |||| || || || || Sbjct 238 GCCTTAACATTGTCGATTGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCTGTC 297 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 298 AGGGTCTTGACAAAGATCTGCAT 320 >seq126021 Length=250 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || ||||| || ||||||||||| | || | |||| || | ||| Sbjct 219 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCGGCTAGTGTACGACCATCTTCGAGCTGC 160 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| ||||| | || ||||| || ||||| ||||| || |||||||| || Sbjct 159 TTGCCTGCAAAGATCAACCTTTGCTGATCCGGGGGAATACCTTCCTTGTCTTGAATCTTA 100 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||||| |||| ||||| || || | || || || || Sbjct 99 GCTTTGACATTGTCGATTGTGTCAGAGCTTTCAACTTCTAGTGTAATAGTCTTCCCCGTG 40 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || ||||| Sbjct 39 AGCGTTTTGACGAAAATTTGCAT 17 >seq21568 Length=652 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || ||||||||||| || | ||| | |||| |||||||| Sbjct 113 TGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCCAATTGT 172 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||||||||| || ||||| || || || |||||||| ||| Sbjct 173 TTTCCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATCCCCTCCTTGTCTTGAATCTTT 232 >seq277496 Length=739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || |||||||| || || ||||| || || ||||| || | |||| |||| Sbjct 261 AAGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTATAATCTGCAAGCGTTCGACCATCT 202 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||||||||||||| ||||| || || | ||| || || || ||||| ||||| || || Sbjct 201 TCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 142 Query 101378 TGAAT 101382 || || Sbjct 141 TGCAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394804817964984